miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CACAGTGGAGGTAAAGATTG

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 CACAGTGGAGGTAAAGATTGTG CGATTTTTGCTTTCCACTGCACA up 2 1


Secondary structure

CTGAATAGGCAGCTTATTCTTCACAGTGGAGGTAAAGATTGTGGTGAATTTAATGAACACGATTTTTGCTTTCCACTGCACAAGAACATGTATGCAAAGT
---------------------CACAGTGGAGGTAAAGATTGTGG 	1
---------------------CACAGTGGAGGTAAAGATTGTG 	2728
---------------------CACAGTGGAGGTAAAGATTGT 	254
---------------------CACAGTGGAGGTAAAGATTG 	501
---------------------CACAGTGGAGGTAAAGATT 	11
----------------------ACAGTGGAGGTAAAGATTGTG 	25
----------------------ACAGTGGAGGTAAAGATTGT 	1
----------------------ACAGTGGAGGTAAAGATTG 	4
-----------------------CAGTGGAGGTAAAGATTGTG 	1
------------------------AGTGGAGGTAAAGATTGTG 	1
-----------------------------------------------------------CGATTTTTGCTTTCCACTGCAC 	8
-----------------------------------------------------------CGATTTTTGCTTTCCACTG 	1
------------------------------------------------------------GATTTTTGCTTTCCACTGC 	1

Overlaps with: MNEST024973 MNEST024974
Overlaps with miRBase pre-miRNAs: cin-mir-4011a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 CACAGTGGAGGTAAAGATTGTG CGATTTTTGCTTTCCACTGCACA up 2 1


Secondary structure

CTGAATAGGCAGCTTATTCTTCACAGTGGAGGTAAAGATTGTGGTGAATTTAATGAACACGATTTTTGCTTTCCACTGCACAAGAACATGTATGCAAAGT
---------------------CACAGTGGAGGTAAAGATTGTG 	2506
---------------------CACAGTGGAGGTAAAGATTGT 	742
---------------------CACAGTGGAGGTAAAGATTG 	682
---------------------CACAGTGGAGGTAAAGATT 	17
----------------------ACAGTGGAGGTAAAGATTGTG 	42
----------------------ACAGTGGAGGTAAAGATTG 	6
-----------------------------------------------------------CGATTTTTGCTTTCCACTGCAC 	1
-----------------------------------------------------------CGATTTTTGCTTTCCACTGCA 	1

Overlaps with: MNEST024973 MNEST024974
Overlaps with miRBase pre-miRNAs: cin-mir-4011a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 CACAGTGGAGGTAAAGATTGTG CGATTTTTGCTTTCCACTGCACA up 2 1


Secondary structure

CTGAATAGGCAGCTTATTCTTCACAGTGGAGGTAAAGATTGTGGTGAATTTAATGAACACGATTTTTGCTTTCCACTGCACAAGAACATGTATGCAAAGT
--------------------TCACAGTGGAGGTAAAGATTGT 	1
---------------------CACAGTGGAGGTAAAGATTGTGG 	1
---------------------CACAGTGGAGGTAAAGATTGTG 	6870
---------------------CACAGTGGAGGTAAAGATTGT 	55
---------------------CACAGTGGAGGTAAAGATTG 	1161
---------------------CACAGTGGAGGTAAAGATT 	22
----------------------ACAGTGGAGGTAAAGATTGTGG 	2
----------------------ACAGTGGAGGTAAAGATTGTG 	32
----------------------ACAGTGGAGGTAAAGATTGT 	1
----------------------ACAGTGGAGGTAAAGATTG 	10
-----------------------CAGTGGAGGTAAAGATTGTG 	1
------------------------AGTGGAGGTAAAGATTGTG 	1
-----------------------------------------------------------CGATTTTTGCTTTCCACTGCAC 	3
-----------------------------------------------------------CGATTTTTGCTTTCCACTGC 	2

Overlaps with: MNEST024973 MNEST024974
Overlaps with miRBase pre-miRNAs: cin-mir-4011a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 CACAGTGGAGGTAAAGATTG ATTTTTGCTTTCCACTGCACA up 2 1


Secondary structure

CTGAATAGGCAGCTTATTCTTCACAGTGGAGGTAAAGATTGTGGTGAATTTAATGAACACGATTTTTGCTTTCCACTGCACAAGAACATGTATGCAAAGT
---------------------CACAGTGGAGGTAAAGATTG 	2792
---------------------CACAGTGGAGGTAAAGATT 	123
----------------------ACAGTGGAGGTAAAGATTGT 	21
----------------------ACAGTGGAGGTAAAGATTG 	1
-----------------------CAGTGGAGGTAAAGATTGTG 	3

Overlaps with: MNEST024973 MNEST024974
Overlaps with miRBase pre-miRNAs: cin-mir-4011a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 CACAGTGGAGGTAAAGATTGTG CGATTTTTGCTTTCCACTGCACA up 2 1


Secondary structure

CTGAATAGGCAGCTTATTCTTCACAGTGGAGGTAAAGATTGTGGTGAATTTAATGAACACGATTTTTGCTTTCCACTGCACAAGAACATGTATGCAAAGT
---------------------CACAGTGGAGGTAAAGATTGTG 	1511
---------------------CACAGTGGAGGTAAAGATTGT 	15
---------------------CACAGTGGAGGTAAAGATTG 	329
---------------------CACAGTGGAGGTAAAGATT 	15
----------------------ACAGTGGAGGTAAAGATTGTG 	17
----------------------ACAGTGGAGGTAAAGATTGT 	1
----------------------ACAGTGGAGGTAAAGATTG 	3
-----------------------CAGTGGAGGTAAAGATTGTG 	2

Overlaps with: MNEST024973 MNEST024974
Overlaps with miRBase pre-miRNAs: cin-mir-4011a
HuntMi prediction: true miRNA