miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CACGCTCATGCACACACCCACA

selected species: Mus musculus



22 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCC 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	64
----------------------------------------------------------CACGCTCATGCACACACCCAC 	17
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	19
----------------------------------------------------------CACGCTCATGCACACACCC 	2
----------------------------------------------------------CACGCTCATGCACACACCCAC 	11
----------------------------------------------------------CACGCTCATGCACACACCCA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539838 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACAC 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	24
----------------------------------------------------------CACGCTCATGCACACACCCAC 	7
----------------------------------------------------------CACGCTCATGCACACACCCA 	8
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539850 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACAC 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	112
----------------------------------------------------------CACGCTCATGCACACACCCA 	37
----------------------------------------------------------CACGCTCATGCACACACCC 	7
----------------------------------------------------------CACGCTCATGCACACACCCAC 	41
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527276 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	91
----------------------------------------------------------CACGCTCATGCACACACCCAC 	16
----------------------------------------------------------CACGCTCATGCACACACCCA 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539869 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	16
----------------------------------------------------------CACGCTCATGCACACACCCAC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539870 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
---CTGCGTGGGTGCGGGCGTG 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	17
----------------------------------------------------------CACGCTCATGCACACACCCAC 	2
----------------------------------------------------------CACGCTCATGCACACACCCA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539849 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	12
----------------------------------------------------------CACGCTCATGCACACACCCAC 	3
----------------------------------------------------------CACGCTCATGCACACACCCA 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM527277-2110 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCC 	2
----------------------------------------------------------CACGCTCATGCACACACCCA 	10
----------------------------------------------------------CACGCTCATGCACACACCCACA 	198
----------------------------------------------------------CACGCTCATGCACACACCCAC 	49
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	7
-----------------------------------------------------------ACGCTCATGCACACACCCAC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539848 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	33
----------------------------------------------------------CACGCTCATGCACACACCCA 	4
----------------------------------------------------------CACGCTCATGCACACACCC 	4
----------------------------------------------------------CACGCTCATGCACACACCCAC 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539872 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	10
----------------------------------------------------------CACGCTCATGCACACACCCAC 	2
----------------------------------------------------------CACGCTCATGCACACACCCA 	2
----------------------------------------------------------CACGCTCATGCACACACCC 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539861 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	52
----------------------------------------------------------CACGCTCATGCACACACCC 	7
----------------------------------------------------------CACGCTCATGCACACACCCA 	19
----------------------------------------------------------CACGCTCATGCACACACCCAC 	19
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM539847 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
---CTGCGTGGGTGCGGGCGTG 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	6
----------------------------------------------------------CACGCTCATGCACACACCCA 	2
----------------------------------------------------------CACGCTCATGCACACACCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM539853 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	27
----------------------------------------------------------CACGCTCATGCACACACCCA 	2
----------------------------------------------------------CACGCTCATGCACACACCCAC 	5
----------------------------------------------------------CACGCTCATGCACACACCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Mus musculus GSM539878 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	54
----------------------------------------------------------CACGCTCATGCACACACCCA 	5
----------------------------------------------------------CACGCTCATGCACACACCC 	6
----------------------------------------------------------CACGCTCATGCACACACCCAC 	22
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Mus musculus GSM539873 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	40
----------------------------------------------------------CACGCTCATGCACACACCCA 	2
----------------------------------------------------------CACGCTCATGCACACACCC 	4
----------------------------------------------------------CACGCTCATGCACACACCCAC 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Mus musculus GSM539875 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	22
----------------------------------------------------------CACGCTCATGCACACACCCAC 	6
----------------------------------------------------------CACGCTCATGCACACACCC 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Mus musculus GSM539867 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
---CTGCGTGGGTGCGGGCGTGT 	1
----------------------------------------------------------CACGCTCATGCACACACCCACACG 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	158
----------------------------------------------------------CACGCTCATGCACACACCCAC 	29
----------------------------------------------------------CACGCTCATGCACACACCCA 	16
----------------------------------------------------------CACGCTCATGCACACACCC 	5
-----------------------------------------------------------ACGCTCATGCACACACCCAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Mus musculus GSM539876 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	46
----------------------------------------------------------CACGCTCATGCACACACCCAC 	15
----------------------------------------------------------CACGCTCATGCACACACCCA 	10
----------------------------------------------------------CACGCTCATGCACACACCC 	1
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Mus musculus GSM539854 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
---CTGCGTGGGTGCGGGCGTG 	1
------------------------------------------------------AGTCCACGCTCATGCACAC 	1
----------------------------------------------------------CACGCTCATGCACACACCCACA 	135
----------------------------------------------------------CACGCTCATGCACACACCCAC 	19
----------------------------------------------------------CACGCTCATGCACACACCCA 	7
----------------------------------------------------------CACGCTCATGCACACACCC 	6


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Mus musculus GSM527279-2112 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCC 	2
----------------------------------------------------------CACGCTCATGCACACACCCA 	7
----------------------------------------------------------CACGCTCATGCACACACCCACA 	121
----------------------------------------------------------CACGCTCATGCACACACCCAC 	23
-----------------------------------------------------------ACGCTCATGCACACACCCACA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Mus musculus GSM539874 CACGCTCATGCACACACCCACA TGAGTGTGTGTGTGTGAGTGTGTG down 1 2


Secondary structure

GCCCTGCGTGGGTGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACGCCCGGTCTG
----------------------------------------------------------CACGCTCATGCACACACCCACA 	74
----------------------------------------------------------CACGCTCATGCACACACCCAC 	28
----------------------------------------------------------CACGCTCATGCACACACCCA 	16
----------------------------------------------------------CACGCTCATGCACACACCC 	6
-----------------------------------------------------------ACGCTCATGCACACACCCAC 	1


HuntMi prediction: true miRNA