miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CACTAGATTGTGAGCTCCTGGA

selected species: Sus scrofa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636848 CACTAGATTGTGAGCTCCTGGA AAGGAGCTCACAGTCTATTGAG down 2 0


Secondary structure

ACAAGAAAGAATAAAAAATGGTCCTTGCCCTCAAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGTCTTCCCCACTAGATTGTGAGCTCCTGGAGGGCAGGCACTTTTGTTCAACTGAAAAAA
-------------------------------CAAGGAGCTCACAGTCTATTGA 	1
-------------------------------CAAGGAGCTCACAGTCTATTGAG 	1
-------------------------------CAAGGAGCTCACAGTCTATTG 	4
--------------------------------AAGGAGCTCACAGTCTATTGAG 	1996
--------------------------------AAGGAGCTCACAGTCTATTG 	91
--------------------------------AAGGAGCTCACAGTCTATTGA 	490
--------------------------------AAGGAGCTCACAGTCTATTGAGTT 	2
--------------------------------AAGGAGCTCACAGTCTATTGAGT 	25
--------------------------------AAGGAGCTCACAGTCTATT 	21
---------------------------------AGGAGCTCACAGTCTATTGA 	3
---------------------------------AGGAGCTCACAGTCTATTGAG 	18
-----------------------------------------------------------------------CCACTAGATTGTGAGCTCCTGG 	13
-----------------------------------------------------------------------CCACTAGATTGTGAGCTCCTG 	1
-----------------------------------------------------------------------CCACTAGATTGTGAGCTCCTGGA 	11
------------------------------------------------------------------------CACTAGATTGTGAGCTCCTGGA 	3789
------------------------------------------------------------------------CACTAGATTGTGAGCTCCT 	14
------------------------------------------------------------------------CACTAGATTGTGAGCTCCTGGAG 	523
------------------------------------------------------------------------CACTAGATTGTGAGCTCCTG 	46
------------------------------------------------------------------------CACTAGATTGTGAGCTCCTGG 	923
-------------------------------------------------------------------------ACTAGATTGTGAGCTCCTGG 	9
-------------------------------------------------------------------------ACTAGATTGTGAGCTCCTGGAG 	149
-------------------------------------------------------------------------ACTAGATTGTGAGCTCCTGGA 	55
-------------------------------------------------------------------------ACTAGATTGTGAGCTCCTGGAGG 	1
--------------------------------------------------------------------------CTAGATTGTGAGCTCCTGGAG 	6


Overlaps with miRBase pre-miRNAs: ssc-mir-28
HuntMi prediction: true miRNA