miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CACTTTGCAATTGGAGATTGCT

selected species: Drosophila melanogaster



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM371638-15389 CACTTTGCAATTGGAGATTGCT TAATCTCAATTTGTAAATGTGAG down 4 1


Secondary structure

TGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTTTAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGC
------------TAATCTCAATTTGTAAATGTGA 	4
------------TAATCTCAATTTGTAAATGTGAG 	95
--------------ATCTCAATTTGTAAATGTGAGCG 	1
----------------CTCAATTTGTAAATGTGAG 	1
---------------------------------------------------------TCACTTTGCAATTGGAGATTGC 	2
----------------------------------------------------------CACTTTGCAATTGGAGATTGC 	3
----------------------------------------------------------CACTTTGCAATTGGAGATTGCT 	98
-----------------------------------------------------------ACTTTGCAATTGGAGATTGCT 	2

Overlaps with: MNEST036443 MNEST036444
Overlaps with miRBase pre-miRNAs: dme-mir-304
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM343833-15151 CACTTTGCAATTGGAGATTGCT TAATCTCAATTTGTAAATGTGAG down 4 1


Secondary structure

TGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTTTAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGC
------------TAATCTCAATTTGTAAATGTGA 	3
------------TAATCTCAATTTGTAAATGTGAG 	79
----------------------------------------------------CGCACTCACTTTGCAATTGGAGA 	1
---------------------------------------------------------TCACTTTGCAATTGGAGATTG 	1
---------------------------------------------------------TCACTTTGCAATTGGAGATTGCT 	1
----------------------------------------------------------CACTTTGCAATTGGAGATTGC 	4
----------------------------------------------------------CACTTTGCAATTGGAGATTGCT 	84
-----------------------------------------------------------ACTTTGCAATTGGAGATTGCT 	3

Overlaps with: MNEST036443 MNEST036444
Overlaps with miRBase pre-miRNAs: dme-mir-304
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM343832-15149 CACTTTGCAATTGGAGATTGCT TAATCTCAATTTGTAAATGTGAG down 4 1


Secondary structure

TGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTTTAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGC
------------TAATCTCAATTTGTAAATGTGA 	7
------------TAATCTCAATTTGTAAATGTGAGC 	1
------------TAATCTCAATTTGTAAATGTG 	1
------------TAATCTCAATTTGTAAATGTGAG 	55
---------------------------------------------------------TCACTTTGCAATTGGAGATTG 	2
---------------------------------------------------------TCACTTTGCAATTGGAGATTGC 	1
----------------------------------------------------------CACTTTGCAATTGGAGATTGC 	7
----------------------------------------------------------CACTTTGCAATTGGAGATTGCT 	89
----------------------------------------------------------CACTTTGCAATTGGAGATTG 	1

Overlaps with: MNEST036443 MNEST036444
Overlaps with miRBase pre-miRNAs: dme-mir-304
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399100-5263 CACTTTGCAATTGGAGATTGCT TAATCTCAATTTGTAAATGTGAG down 4 1


Secondary structure

TGCAGCATTGAATAATCTCAATTTGTAAATGTGAGCGGTTTAAGCCATTTGACGCACTCACTTTGCAATTGGAGATTGCTCGAGACTGC
------------TAATCTCAATTTGTAAATGT 	2
------------TAATCTCAATTTGTAAATGTGA 	122
------------TAATCTCAATTTGTAAATGTGAGC 	1
------------TAATCTCAATTTGTAAATGTG 	12
------------TAATCTCAATTTGTAAATGTGAG 	684
-------------AATCTCAATTTGTAAATGTGAG 	1
-----------------------------------CGGTTTAAGCCATTTGACGCACT 	5
--------------------------------------------------------CTCACTTTGCAATTGGAGATTGC 	1
--------------------------------------------------------CTCACTTTGCAATTGGAGATTG 	1
---------------------------------------------------------TCACTTTGCAATTGGAGATTG 	26
---------------------------------------------------------TCACTTTGCAATTGGAGATTGC 	16
---------------------------------------------------------TCACTTTGCAATTGGAGATTGCT 	30
----------------------------------------------------------CACTTTGCAATTGGAGATTGC 	71
----------------------------------------------------------CACTTTGCAATTGGAGATTGCTC 	1
----------------------------------------------------------CACTTTGCAATTGGAGATTGCT 	971
----------------------------------------------------------CACTTTGCAATTGGAGATTG 	3
-----------------------------------------------------------ACTTTGCAATTGGAGATTG 	1
-----------------------------------------------------------ACTTTGCAATTGGAGATTGCT 	7
-----------------------------------------------------------ACTTTGCAATTGGAGATTGC 	2

Overlaps with: MNEST036443 MNEST036444
Overlaps with miRBase pre-miRNAs: dme-mir-304
HuntMi prediction: true miRNA