miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGAGGAAGACTGATGCTAGTT

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 CAGAGGAAGACTGATGCTAGTT CAGCTCATATGACCTCAGCA up 6 2


Secondary structure

GGGGCTCCTTGCAGAGGAAGACTGATGCTAGTTATTTGTTTCCCACTGACTGCCTCATGTCCTCCTCTAGGGGAGGATGACAAGAGCCGATTCAAACGGACAGTGACTACTGGAGGGTTTTTTGTCCCAGTGATGAAAATTCGGACAGGAGGCACAGGCAGCTCATATGACCTCAGCAAGGAG
---------TGCAGAGGAAGACTGATGCTAGTT 	3
----------GCAGAGGAAGACTGATGCTAGTT 	3
-----------CAGAGGAAGACTGATGCTAGTTA 	4
-----------CAGAGGAAGACTGATGCTAGTT 	6


Overlaps with: MNEST026373
Overlaps with miRBase pre-miRNAs: gga-mir-3539
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 CAGAGGAAGACTGATGCTAGTT CAGCTCATATGACCTCAGCA up 6 2


Secondary structure

GGGGCTCCTTGCAGAGGAAGACTGATGCTAGTTATTTGTTTCCCACTGACTGCCTCATGTCCTCCTCTAGGGGAGGATGACAAGAGCCGATTCAAACGGACAGTGACTACTGGAGGGTTTTTTGTCCCAGTGATGAAAATTCGGACAGGAGGCACAGGCAGCTCATATGACCTCAGCAAGGAG
---------TGCAGAGGAAGACTGATGCTAGTT 	1
----------GCAGAGGAAGACTGATGCTAGTT 	1
-----------CAGAGGAAGACTGATGCTAGTT 	6
-----------CAGAGGAAGACTGATGCTAGTTA 	4
------------AGAGGAAGACTGATGCTAGTTA 	1


Overlaps with: MNEST026373
Overlaps with miRBase pre-miRNAs: gga-mir-3539
HuntMi prediction: not a miRNA