miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CAGCAGCACACTGTGGTTTGT

selected species: Homo sapiens



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 CAGCAGCACACTGTGGTTTGTA CAAACCACACTGTGGTGTTAGA up 4 0


Secondary structure

TGCTCTCTTCCTTTCAACCCACCCCGGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCCGAGGCTTGGCCCTGG
-----------------------------------------CAGCAGCACACTGTGGTTTGTA 	12
-----------------------------------------CAGCAGCACACTGTGGTTTGT 	4
------------------------------------------AGCAGCACACTGTGGTTTGTA 	1

Overlaps with: MNEST027937 MNEST028688
Overlaps with miRBase pre-miRNAs: ptr-mir-497 mml-mir-497 ssc-mir-497 eca-mir-497 cgr-mir-497 rno-mir-497 hsa-mir-497 ggo-mir-497
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494810_Normal_2 CAGCAGCACACTGTGGTTTGT AAACCACACTGTGGTGTTAGA up 4 0


Secondary structure

TGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGT
-----------CAGCAGCACACTGTGGTTTGTA 	3
-----------CAGCAGCACACTGTGGTTTGT 	12
-----------CAGCAGCACACTGTGGTTTGTAC 	2

Overlaps with: MNEST027937 MNEST028688
Overlaps with miRBase pre-miRNAs: ptr-mir-497 mml-mir-497 bta-mir-497 eca-mir-497 rno-mir-497 hsa-mir-497 ggo-mir-497
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 CAGCAGCACACTGTGGTTTGTA CAAACCACACTGTGGTGTTAGA up 4 0


Secondary structure

TGCTCTCTTCCTTTCAACCCACCCCGGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCCGAGGCTTGGCCCTGG
-----------------------------------------CAGCAGCACACTGTGGTTTGTA 	14
-----------------------------------------CAGCAGCACACTGTGGTTTGT 	8
-----------------------------------------CAGCAGCACACTGTGGTTTG 	2
------------------------------------------AGCAGCACACTGTGGTTTGTAC 	3
------------------------------------------AGCAGCACACTGTGGTTTGTA 	1

Overlaps with: MNEST027937 MNEST028688
Overlaps with miRBase pre-miRNAs: ptr-mir-497 mml-mir-497 ssc-mir-497 eca-mir-497 cgr-mir-497 rno-mir-497 hsa-mir-497 ggo-mir-497
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531978 CAGCAGCACACTGTGGTTTGT AAACCACACTGTGGTGTTAGA up 4 0


Secondary structure

TGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGT
-----------CAGCAGCACACTGTGGTTTGTA 	84
-----------CAGCAGCACACTGTGGTTTGT 	205
-----------CAGCAGCACACTGTGGTTTG 	63
-----------CAGCAGCACACTGTGGTTT 	42
-----------CAGCAGCACACTGTGGTTTGTAC 	2
------------AGCAGCACACTGTGGTTTGTA 	34
------------AGCAGCACACTGTGGTTTGT 	38
------------AGCAGCACACTGTGGTTTG 	61
------------AGCAGCACACTGTGGTTTGTAC 	5
------------AGCAGCACACTGTGGTTTGTACG 	3

Overlaps with: MNEST027937 MNEST028688
Overlaps with miRBase pre-miRNAs: ptr-mir-497 mml-mir-497 bta-mir-497 eca-mir-497 rno-mir-497 hsa-mir-497 ggo-mir-497
HuntMi prediction: true miRNA