miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGCCAAGAATGATTTGCCGG

selected species: Vitis vinifera



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 CAGCCAAGAATGATTTGCCGG GGCAAGTTGTCCTTGGCTACA up 2 0


Secondary structure

CCCTTGGTGTTTGGTCTTAGAGTCTTGCATGAAGAGGTTGAGAGTGGAATGCAGCCAAGAATGATTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATAGGCTTTCACATATATAGTGAACCCTGGCAAGTTGTCCTTGGCTACATTTGATTCTCTTCTTCTTATGTGAGTCTCCACAGACCTGTCAGTTATC
---------------------------------------------------CAGCCAAGAATGATTTGCCGG 	10

Overlaps with: MNEST041600 MNEST054806
Overlaps with miRBase pre-miRNAs: vvi-MIR169d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 CAGCCAAGAATGATTTGCCGG GGCAAGTTGTCCTTGGCTACA up 2 0


Secondary structure

CCCTTGGTGTTTGGTCTTAGAGTCTTGCATGAAGAGGTTGAGAGTGGAATGCAGCCAAGAATGATTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATAGGCTTTCACATATATAGTGAACCCTGGCAAGTTGTCCTTGGCTACATTTGATTCTCTTCTTCTTATGTGAGTCTCCACAGACCTGTCAGTTATC
---------------------------------------------------CAGCCAAGAATGATTTGCCGG 	18
---------------------------------------------------CAGCCAAGAATGATTTGCCG 	1
----------------------------------------------------AGCCAAGAATGATTTGCCGG 	1

Overlaps with: MNEST041600 MNEST054806
Overlaps with miRBase pre-miRNAs: vvi-MIR169d
HuntMi prediction: true miRNA