miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGA

selected species: Arabidopsis thaliana



11 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	47
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-------------------CGAATGTGACGAAAGTAGTGTG 	1
----------------------------------TAGTGTGCAGCCAAGGATGAC 	1
----------------------------------------GCAGCCAAGGATGACTTGCCG 	3
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	149
------------------------------------------AGCCAAGGATGACTTGCCGA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTACA 	17
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	35
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTAC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCCTTGGCTACACGTTAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM424847-4989 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	10
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415785 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
---------------------------------------TGCAGCCAAGGATGACTTGCC 	2
----------------------------------------GCAGCCAAGGATGACTTGCCG 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	6
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGGCAAGTTGTCCTTGGCTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCAAGTTGTCCTTGGCTAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366870 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
---------------------------------------TGCAGCCAAGGATGACTTGCC 	1
----------------------------------------GCAGCCAAGGATGACTTGCCG 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	1198
------------------------------------------AGCCAAGGATGACTTGCCGA 	21
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTACAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTAC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366869 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGATT 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	26
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCAAGTTGTCCTTGGCT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM304284 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	37
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM366866 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
---------------------------------------TGCAGCCAAGGATGACTTGCC 	4
---------------------------------------TGCAGCCAAGGATGACTTGCCGAT 	1
----------------------------------------GCAGCCAAGGATGACTTGCCGA 	1
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1
-----------------------------------------CAGCCAAGGATGACTTGCC 	2
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	4549
-----------------------------------------CAGCCAAGGATGACTTGCCGAT 	1
------------------------------------------AGCCAAGGATGACTTGCCGA 	62
------------------------------------------AGCCAAGGATGACTTGCCGAT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCAAGTTGTCCTTGGCTAC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGCAAGTTGTCCTTGGCTA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAAGTTGTCCTTGGCTAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAAGTTGTCCTTGGCTA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	12
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTACAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTACACGTTACTTTGTG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTCGCGCATAGGTGTTA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM304283 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	8
------------------------------------------AGCCAAGGATGACTTGCCGA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM304285 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	7
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM518432-13544 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCCTTGGCTACA up 1 0


Secondary structure

GGGTATAGCTAGTGAAACGCGAATGTGACGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAATGATCTTTCTTTATACTCTATTAAGACAATTTAGTTTCAAACTTTTTTTTTTTTTTTTTTTTGAAGGATTCAGGAAGAAATTAGGATATATTATTCCGTATAAAATACAAGATATATAAAACCAAAAAGAAAAAGTAACATGATCGGCAAGTTGTCCTTGGCTACACGTTACTTTGTGTCGCGCATAGGTGTTATATGGTAAAG
---------------------------------------TGCAGCCAAGGATGACTTGCC 	3
----------------------------------------GCAGCCAAGGATGACTTGCCGA 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGATT 	2
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	2791
------------------------------------------AGCCAAGGATGACTTGCCGA 	43
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTA 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	20
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTACA 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTAC 	13
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTGGCTACA 	3


HuntMi prediction: true miRNA