miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGA

selected species: Oryza sativa



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571078-22531 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
--------------------TTGGGATCGGAGGCCATGGTG 	109
--------------------TTGGGATCGGAGGCCATGG 	14
--------------------TTGGGATCGGAGGCCATGGT 	7
--------------------TTGGGATCGGAGGCCATGGTGC 	5
---------------------TGGGATCGGAGGCCATGGTGC 	2
-------------------------ATCGGAGGCCATGGTGCAGCC 	35
-------------------------ATCGGAGGCCATGGTGCAGC 	5
-------------------------ATCGGAGGCCATGGTGCAG 	2
--------------------------TCGGAGGCCATGGTGCAGCCA 	5
--------------------------TCGGAGGCCATGGTGCAGC 	1
--------------------------TCGGAGGCCATGGTGCAGCC 	1
---------------------------------CCATGGTGCAGCCAAGGATGAC 	1
---------------------------------------TGCAGCCAAGGATGACTTGCC 	2
----------------------------------------GCAGCCAAGGATGACTTGCCG 	4
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	335
-----------------------------------------CAGCCAAGGATGACTTGCC 	7
-----------------------------------------CAGCCAAGGATGACTTGCCG 	5
-----------------------------------------CAGCCAAGGATGACTTGCCGATCG 	4
------------------------------------------AGCCAAGGATGACTTGCCGA 	17
------------------------------------------AGCCAAGGATGACTTGCCG 	1
--------------------------------------------CCAAGGATGACTTGCCGATCG 	1
---------------------------------------------CAAGGATGACTTGCCGATCG 	2
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	133
----------------------------------------------AAGGATGACTTGCCGATCGATCG 	44
----------------------------------------------AAGGATGACTTGCCGATCGAT 	36
----------------------------------------------AAGGATGACTTGCCGATCGATCGAT 	8
----------------------------------------------AAGGATGACTTGCCGATCG 	2
----------------------------------------------AAGGATGACTTGCCGATCGATC 	1
----------------------------------------------AAGGATGACTTGCCGATCGA 	1
-----------------------------------------------AGGATGACTTGCCGATCGATC 	1
-----------------------------------------------AGGATGACTTGCCGATCGATCGA 	1
-------------------------------------------------------TTGCCGATCGATCGATCTATCT 	1
------------------------------------------------------------------------------------------------------------------ATTGGCAAGTTGTTCTTGGCTAC 	3
------------------------------------------------------------------------------------------------------------------ATTGGCAAGTTGTTCTTGGCT 	2
-------------------------------------------------------------------------------------------------------------------TTGGCAAGTTGTTCTTGGCTAC 	1
--------------------------------------------------------------------------------------------------------------------TGGCAAGTTGTTCTTGGCTAC 	5
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTAC 	1
----------------------------------------------------------------------------------------------------------------------GCAAGTTGTTCTTGGCTAC 	1
-----------------------------------------------------------------------------------------------------------------------CAAGTTGTTCTTGGCTACAT 	1
----------------------------------------------------------------------------------------------------------------------------TGTTCTTGGCTACATCTTGGC 	1
-----------------------------------------------------------------------------------------------------------------------------GTTCTTGGCTACATCTTGGCC 	1
-------------------------------------------------------------------------------------------------------------------------------------CTACATCTTGGCCCCTGCTCC 	12
-------------------------------------------------------------------------------------------------------------------------------------CTACATCTTGGCCCCTGCT 	8
-------------------------------------------------------------------------------------------------------------------------------------CTACATCTTGGCCCCTGCTC 	2
--------------------------------------------------------------------------------------------------------------------------------------TACATCTTGGCCCCTGCTCC 	1

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
---------------------------------------TGCAGCCAAGGATGACTTGCC 	2
----------------------------------------GCAGCCAAGGATGACTTGCCGA 	1
-----------------------------------------CAGCCAAGGATGACTTGCC 	6
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	38
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
----------------------------------------------AAGGATGACTTGCCGATCGATCG 	3
-------------------------------------------------------------------------------------------------------------CATCAATTGGCAAGTTGTTCTTGG 	6
-------------------------------------------------------------------------------------------------------------CATCAATTGGCAAGTTGTT 	1
--------------------------------------------------------------------------------------------------------------ATCAATTGGCAAGTTGTTCTTGG 	1
--------------------------------------------------------------------------------------------------------------ATCAATTGGCAAGTTGTTCTT 	2
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTA 	1

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686040-31373 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
--------------------TTGGGATCGGAGGCCATGGTG 	1
--------------------------TCGGAGGCCATGGTGCAGCCA 	1
----------------------------------------GCAGCCAAGGATGACTTGCCG 	11
-----------------------------------------CAGCCAAGGATGACTTGCCGAT 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	358
-----------------------------------------CAGCCAAGGATGACTTGCCG 	8
-----------------------------------------CAGCCAAGGATGACTTGCC 	4
------------------------------------------AGCCAAGGATGACTTGCCGA 	4
------------------------------------------AGCCAAGGATGACTTGCCG 	2
---------------------------------------------CAAGGATGACTTGCCGATCGA 	1
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	8
----------------------------------------------AAGGATGACTTGCCGATCGAT 	10
----------------------------------------------AAGGATGACTTGCCGATCGA 	1
------------------------------------------------------------------------------------------------------------------ATTGGCAAGTTGTTCTTGG 	1
-------------------------------------------------------------------------------------------------------------------TTGGCAAGTTGTTCTTGGCTAC 	1
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTAC 	1

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520640-18679 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
---------------------------------------TGCAGCCAAGGATGACTTGCC 	1
-----------------------------------------CAGCCAAGGATGACTTGCC 	9
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	124
-----------------------------------------CAGCCAAGGATGACTTGCCG 	4
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
----------------------------------------------AAGGATGACTTGCCGATCGATCG 	6
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	5
-------------------------------------------------GATGACTTGCCGATCGATCG 	1
------------------------------------------------------------------------------------------------------------CCATCAATTGGCAAGTTGTTCTTGG 	2
-------------------------------------------------------------------------------------------------------------CATCAATTGGCAAGTTGTTCT 	2
-------------------------------------------------------------------------------------------------------------CATCAATTGGCAAGTTGTTCTTGG 	21
--------------------------------------------------------------------------------------------------------------ATCAATTGGCAAGTTGTTCTTGG 	7
----------------------------------------------------------------------------------------------------------------CAATTGGCAAGTTGTTCTTGG 	1
--------------------------------------------------------------------------------------------------------------------TGGCAAGTTGTTCTTGGCTAC 	1
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTAC 	2
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTA 	3

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM686039-31370 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
----------------------------------------GCAGCCAAGGATGACTTGCCGA 	1
----------------------------------------GCAGCCAAGGATGACTTGCCG 	3
-----------------------------------------CAGCCAAGGATGACTTGCCGAT 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	109
-----------------------------------------CAGCCAAGGATGACTTGCCG 	8
-----------------------------------------CAGCCAAGGATGACTTGCC 	3
------------------------------------------AGCCAAGGATGACTTGCCGA 	2
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	1
----------------------------------------------AAGGATGACTTGCCGATCGAT 	4

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520637-18674 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	56
----------------------------------------------AAGGATGACTTGCCGATCGATCGAT 	1
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	1
--------------------------------------------------------------------------------------------------------------ATCAATTGGCAAGTTGTTCTTGG 	2
-----------------------------------------------------------------------------------------------------------------AATTGGCAAGTTGTTCTTGG 	1
---------------------------------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTAC 	2
------------------------------------------------------------------------------------------------------------------------------------------TCTTGGCCCCTGCTCCTCATG 	1

Overlaps with: MNEST004026
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM520639-18678 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
-------------------------ATCGGAGGCCATGGTGCAGCC 	1
---------------------------------------TGCAGCCAAGGATGACTTGCC 	2
-----------------------------------------CAGCCAAGGATGACTTGCC 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGA 	98
------------------------------------------AGCCAAGGATGACTTGCCGA 	1
-------------------------------------------GCCAAGGATGACTTGCCGA 	1
----------------------------------------------AAGGATGACTTGCCGATCGATCGA 	2
----------------------------------------------AAGGATGACTTGCCGATCGATCG 	5
-------------------------------------------------------------------------------------------------------------CATCAATTGGCAAGTTGTTCTTGG 	24

Overlaps with: MNEST004026
HuntMi prediction: true miRNA