miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGA

selected species: Vitis vinifera



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCTTTGGCTACA up 2 0


Secondary structure

TTATCATCTCTCTCACCCGCAGCCTTGCATGTAGGCTCAGAAAGTATGGTGCAGCCAAGGATGACTTGCCGACTCTCTACTTAGCCATCTGCCTTTCTCCAAGGAGGCTTGCAGTACTGATGAAGCCGGCAAGTTGTCTTTGGCTACATGCTTCTTTCTGCTCCTCATGCTAGGCTTTTGGTGATAATTAATAATA
---------------------------------------------------CAGCCAAGGATGACTTGCCGA 	6

Overlaps with: MNEST041603 MNEST054809
Overlaps with miRBase pre-miRNAs: vvi-MIR169g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 CAGCCAAGGATGACTTGCCGA GGCAAGTTGTCTTTGGCTACA up 2 0


Secondary structure

TTATCATCTCTCTCACCCGCAGCCTTGCATGTAGGCTCAGAAAGTATGGTGCAGCCAAGGATGACTTGCCGACTCTCTACTTAGCCATCTGCCTTTCTCCAAGGAGGCTTGCAGTACTGATGAAGCCGGCAAGTTGTCTTTGGCTACATGCTTCTTTCTGCTCCTCATGCTAGGCTTTTGGTGATAATTAATAATA
---------------------------------------------------CAGCCAAGGATGACTTGCCGA 	14
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGA 	1
-----------------------------------------------------------------------------------------------------------------------------CCGGCAAGTTGTCTTTGGCTAC 	1

Overlaps with: MNEST041603 MNEST054809
Overlaps with miRBase pre-miRNAs: vvi-MIR169g
HuntMi prediction: true miRNA