miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Arabidopsis thaliana

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
---------------------------------------------------CAGCCAAGGATGACTTGCCGGAA 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM304282	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM366870	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	1
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	31
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1
------------------------------------------------------------ATGACTTGCCGGAACGTTGTT 	1
---------------------------------------------------------------ACTTGCCGGAACGTTGTTAAC 	1
----------------------------------------------------------------------------------------------------GTGATGATTAATTATGTGATGAACA 	1
---------------------------------------------------------------------------------------------------------------------------------TCTGGCAAGTTGTCCTTCGGCT 	1
-----------------------------------------------------------------------------------------------------------------------------------TGGCAAGTTGTCCTTCGGCTA 	1

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM366870	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	31
---------------------------------------------------CAGCCAAGGATGACTTGCCGGTA 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM366866	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	4
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	24
---------------------------------------------------CAGCCAAGGATGACTTGCC 	2
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	2
---------------------------------------------------------------------------------------------------------------------------------TCTGGCAAGTTGTCCTTCGGC 	1
------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTCGGCTACA 	1

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM366866	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	4
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	24
---------------------------------------------------CAGCCAAGGATGACTTGCC 	2
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM424848-4990	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	8
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTCGGCTA 	1

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM424848-4990	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	2
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	8
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM518432-13544	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	3
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	18
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1
-----------------------------------------------------------------------------------------------------------------------------------TGGCAAGTTGTCCTTCGGCTAC 	3

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM518432-13544	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCGGTA 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	6
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	18
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM277608	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTCGGCTACA	up	1	1

Secondary structure

ACATTCTTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTTTCCTTGGGATATTCTACCTT
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	2
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	7
----------------------------------------------------AGCCAAGGATGACTTGCCG 	1
-----------------------------------------------------------------------------------------------------------------------------------TGGCAAGTTGTCCTTCGGCTAC 	1
-------------------------------------------------------------------------------------------------------------------------------------GCAAGTTGTCCTTCGGCTACAT 	1

Overlaps with: MNEST047674
Overlaps with miRBase pre-miRNAs: ath-MIR169b aqc-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM277608	CAGCCAAGGATGACTTGCCGG	GGCAAGTCATCTATGGCTATG	up	2	0

Secondary structure

ATGGATTGTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTGTATTATGATTACTCTATATTCGATTTATATTATGGAGATGATGGTTTATATATATTTACTTATCTACATAGTTTTAGTTGATTTTTTTTCGTACGTAATATAATACGAAAAAGTATTTACTTATTTATATATGTGTGTTGGGGCAAGAAGTGTAACCAAGCTAGCCCGGCAAGTCATCTATGGCTATGCAACTGTCTCTTCCTCTCATTCTAGGCTTACGATGACACGTAAAAAAT
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	7
----------------------------------------------------AGCCAAGGATGACTTGCCG 	1

HuntMi prediction: true miRNA