miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Brachypodium distachyon

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Brachypodium distachyon	GSM506620-12051	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACA	up	1	0

Secondary structure

GAACATATACTGGGGAGGCTTCTGCTGGGTTGCCATACGCTAAGAGGCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCCGGCAGGTTGTCCTTGGCTACACCTAGTTCTCTTCTTCTGGTGTTTGGCCCTCAAGTATTGTCAAAGATCTCTAATATCT
-------------------------------------------------------------CAGCCAAGGATGACTTGCCGGC 	19
-------------------------------------------------------------CAGCCAAGGATGACTTGCCGG 	612
--------------------------------------------------------------AGCCAAGGATGACTTGCCGGC 	10
--------------------------------------------------------------AGCCAAGGATGACTTGCCGG 	21
---------------------------------------------------------------GCCAAGGATGACTTGCCGGC 	1
---------------------------------------------------------------GCCAAGGATGACTTGCCGG 	1
-------------------------------------------------------------------------------------------------------------------------------CCGGCAGGTTGTCCTTGGCTA 	1
--------------------------------------------------------------------------------------------------------------------------------CGGCAGGTTGTCCTTGGCTA 	5
--------------------------------------------------------------------------------------------------------------------------------CGGCAGGTTGTCCTTGGCT 	1
---------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTCCTTGGCTACA 	51
---------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTCCTTGGCTA 	260
----------------------------------------------------------------------------------------------------------------------------------GCAGGTTGTCCTTGGCTACA 	2
------------------------------------------------------------------------------------------------------------------------------------AGGTTGTCCTTGGCTACACCTAGT 	1
---------------------------------------------------------------------------------------------------------------------------------------------TTGGCTACACCTAGTTCTCTTC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGTTCTCTTCTTCTGGTGT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGTTCTCTTCTTCTGGTG 	12
------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGTTCTCTTCTTCTGGT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGTTCTCTTCTTCTGG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTCTCTTCTTCTGGTG 	1

Overlaps with: MNEST041755
Overlaps with miRBase pre-miRNAs: bdi-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Brachypodium distachyon	GSM506620-12051	CAGCCAAGGATGACTTGCCGG	GGCAAGTTTGTCCTTGGCTACA	up	1	1

Secondary structure

GGGATCGAAGGGCCATGCAGGACGAGGCACAGAGCAGGATGCAGCCAAGGATGACTTGCCGGCCGGCTGGCCGGCAATGTCGCCGCCGGCGTGACATGATGCTTGCCCGGCAAGTTTGTCCTTGGCTACACCTTGCTCTCTGCCCATCATGTGTTGCCCTTTGCTTGG
-----------------------------------------CAGCCAAGGATGACTTGCCGGC 	19
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	612
------------------------------------------AGCCAAGGATGACTTGCCGGC 	10
------------------------------------------AGCCAAGGATGACTTGCCGG 	21
-------------------------------------------GCCAAGGATGACTTGCCGGC 	1
-------------------------------------------GCCAAGGATGACTTGCCGG 	1
-----------------------------------------------------------------------------------------------------------CGGCAAGTTTGTCCTTGGC 	1
------------------------------------------------------------------------------------------------------------GGCAAGTTTGTCCTTGGCTA 	4

Overlaps with: MNEST041758
Overlaps with miRBase pre-miRNAs: bdi-MIR169f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Brachypodium distachyon	GSM506621-23192	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACA	up	1	0

Secondary structure

GAACATATACTGGGGAGGCTTCTGCTGGGTTGCCATACGCTAAGAGGCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCCGGCAGGTTGTCCTTGGCTACACCTAGTTCTCTTCTTCTGGTGTTTGGCCCTCAAGTATTGTCAAAGATCTCTAATATCT
---------------------------------------CTAAGAGGCAGAGAAGGGGATG 	1
-----------------------------------------------------------TGCAGCCAAGGATGACTTGCC 	2
------------------------------------------------------------GCAGCCAAGGATGACTTGCCG 	6
------------------------------------------------------------GCAGCCAAGGATGACTTGCC 	1
-------------------------------------------------------------CAGCCAAGGATGACTTGCCG 	3
-------------------------------------------------------------CAGCCAAGGATGACTTGCCGGC 	2
-------------------------------------------------------------CAGCCAAGGATGACTTGCC 	1
-------------------------------------------------------------CAGCCAAGGATGACTTGCCGG 	545
--------------------------------------------------------------AGCCAAGGATGACTTGCCG 	3
--------------------------------------------------------------AGCCAAGGATGACTTGCCGGC 	5
--------------------------------------------------------------AGCCAAGGATGACTTGCCGG 	12
--------------------------------------------------------------------------------------------------------------------------------CGGCAGGTTGTCCTTGGCTA 	1
--------------------------------------------------------------------------------------------------------------------------------CGGCAGGTTGTCCTTGGCTAC 	5
---------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTCCTTGGCTAC 	159
---------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTCCTTGGCTA 	10
---------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTCCTTGGCTACA 	12
----------------------------------------------------------------------------------------------------------------------------------GCAGGTTGTCCTTGGCTAC 	2

Overlaps with: MNEST041755
Overlaps with miRBase pre-miRNAs: bdi-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Brachypodium distachyon	GSM506621-23192	CAGCCAAGGATGACTTGCCGG	GGCAAGTTTGTCCTTGGCTACA	up	1	1

Secondary structure

GGGATCGAAGGGCCATGCAGGACGAGGCACAGAGCAGGATGCAGCCAAGGATGACTTGCCGGCCGGCTGGCCGGCAATGTCGCCGCCGGCGTGACATGATGCTTGCCCGGCAAGTTTGTCCTTGGCTACACCTTGCTCTCTGCCCATCATGTGTTGCCCTTTGCTTGG
---------------------------------GCAGGATGCAGCCAAGGATGA 	1
---------------------------------------TGCAGCCAAGGATGACTTGCC 	2
----------------------------------------GCAGCCAAGGATGACTTGCCG 	6
----------------------------------------GCAGCCAAGGATGACTTGCC 	1
-----------------------------------------CAGCCAAGGATGACTTGCCG 	3
-----------------------------------------CAGCCAAGGATGACTTGCCGGC 	2
-----------------------------------------CAGCCAAGGATGACTTGCC 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	545
------------------------------------------AGCCAAGGATGACTTGCCG 	3
------------------------------------------AGCCAAGGATGACTTGCCGGC 	5
------------------------------------------AGCCAAGGATGACTTGCCGG 	12
-----------------------------------------------------------------------------------------------------------CGGCAAGTTTGTCCTTGGCTAC 	3

Overlaps with: MNEST041758
Overlaps with miRBase pre-miRNAs: bdi-MIR169f
HuntMi prediction: true miRNA