miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Glycine max

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	73
-----------------------------------------CAGCCAAGGATGACTTGCCG 	34
------------------------------------------AGCCAAGGATGACTTGCCGG 	15

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	73
-------------------------------CAGCCAAGGATGACTTGCCG 	34
--------------------------------AGCCAAGGATGACTTGCCGG 	15

Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543396	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTGTTTGGCTATG	up	2	0

Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	73
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	34
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	15

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM852280	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	19
------------------------------------------AGCCAAGGATGACTTGCCGG 	8

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM852280	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	19
--------------------------------AGCCAAGGATGACTTGCCGG 	8

Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM852280	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTGTTTGGCTATG	up	2	0

Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	19
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	8
------------------------------------------------------------------------------------------------------------------GGCAAGTTGTGTTTGGCTATG 	5

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM852280	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGGCCTTGGCTATA	up	2	0

Secondary structure

AGCATATAACCACCTAAGAAGAACTTGCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGTAAGTGCCACAATTAGGCTCAGTCATT
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	19
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	8
-------------------------------------------------------CAAGGATGACTTGCCGGCATT 	4

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543394	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
----------------------------------------GCAGCCAAGGATGACTTGCCG 	5
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	55
-----------------------------------------CAGCCAAGGATGACTTGCCG 	31

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM543394	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
------------------------------GCAGCCAAGGATGACTTGCCG 	5
-------------------------------CAGCCAAGGATGACTTGCCGG 	55
-------------------------------CAGCCAAGGATGACTTGCCG 	31

Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM543394	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTGTTTGGCTATG	up	2	0

Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	5
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	55
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	31

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543393	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
----------------------------------------GCAGCCAAGGATGACTTGCCG 	13
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	24
-----------------------------------------CAGCCAAGGATGACTTGCCG 	19

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543393	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCTTGGCTACA	up	1	0

Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
------------------------------GCAGCCAAGGATGACTTGCCG 	13
-------------------------------CAGCCAAGGATGACTTGCCGG 	24
-------------------------------CAGCCAAGGATGACTTGCCG 	19

Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Glycine max	GSM543393	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTGTTTGGCTATG	up	2	0

Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	13
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	24
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	19

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA