miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Oryza sativa

24 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	49
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	2
---------------------------------------------------CAGCCAAGGATGACTTGCC 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	2

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM693280	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	49
-------------------------------CAGCCAAGGATGACTTGCCG 	2
-------------------------------CAGCCAAGGATGACTTGCC 	1
--------------------------------AGCCAAGGATGACTTGCCGG 	2

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM571078-22531	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	2
-------------------------------------------------TGCAGCCAAGGATGACTTGCCGGT 	1
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	4
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	1846
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	7
---------------------------------------------------CAGCCAAGGATGACTTGCC 	7
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	5
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	104
----------------------------------------------------AGCCAAGGATGACTTGCCGGT 	2
----------------------------------------------------AGCCAAGGATGACTTGCCG 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGCAAGTTGTCCTTGGCTA 	2
--------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM571078-22531	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
---------CTGTGAGGAGGAGAACGGGATG 	5
---------CTGTGAGGAGGAGAACGGG 	1
---------CTGTGAGGAGGAGAACGGGAT 	1
-----------------------------TGCAGCCAAGGATGACTTGCC 	2
------------------------------GCAGCCAAGGATGACTTGCCG 	4
-------------------------------CAGCCAAGGATGACTTGCCGGC 	21
-------------------------------CAGCCAAGGATGACTTGCCGG 	1846
-------------------------------CAGCCAAGGATGACTTGCC 	7
-------------------------------CAGCCAAGGATGACTTGCCGGCT 	5
-------------------------------CAGCCAAGGATGACTTGCCG 	5
--------------------------------AGCCAAGGATGACTTGCCGGC 	44
--------------------------------AGCCAAGGATGACTTGCCGG 	104
--------------------------------AGCCAAGGATGACTTGCCG 	1
---------------------------------GCCAAGGATGACTTGCCGGC 	1
------------------------------------------------------------------------------------------------------CGGCAAGTCTGTCCTTGGCTAC 	11
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTAC 	37
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTACA 	9
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCT 	2
--------------------------------------------------------------------------------------------------------GCAAGTCTGTCCTTGGCTACA 	3
--------------------------------------------------------------------------------------------------------GCAAGTCTGTCCTTGGCTAC 	2

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520638-18676	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	2
---------------------------------------------------CAGCCAAGGATGACTTGCC 	6
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	552
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	10
-----------------------------------------------------GCCAAGGATGACTTGCCGG 	2

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM520638-18676	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
--------------------------GGATGCAGCCAAGGATGACT 	2
-----------------------------TGCAGCCAAGGATGACTTGCC 	2
-------------------------------CAGCCAAGGATGACTTGCC 	6
-------------------------------CAGCCAAGGATGACTTGCCGG 	552
--------------------------------AGCCAAGGATGACTTGCCGGC 	44
--------------------------------AGCCAAGGATGACTTGCCGG 	10
---------------------------------GCCAAGGATGACTTGCCGG 	2
---------------------------------GCCAAGGATGACTTGCCGGC 	1

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM686040-31373	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	11
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	229
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	8
---------------------------------------------------CAGCCAAGGATGACTTGCC 	4
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	28
----------------------------------------------------AGCCAAGGATGACTTGCCG 	2

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM686040-31373	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
------------------GGAGAACGGGATGCAGCCAAG 	1
---------------------GAACGGGATGCAGCCAAGGATG 	1
------------------------------GCAGCCAAGGATGACTTGCCG 	11
-------------------------------CAGCCAAGGATGACTTGCCGGC 	16
-------------------------------CAGCCAAGGATGACTTGCCGG 	229
-------------------------------CAGCCAAGGATGACTTGCCG 	8
-------------------------------CAGCCAAGGATGACTTGCC 	4
--------------------------------AGCCAAGGATGACTTGCCGGC 	2
--------------------------------AGCCAAGGATGACTTGCCGG 	28
--------------------------------AGCCAAGGATGACTTGCCG 	2
------------------------------------------------------------------------------------------------------CGGCAAGTCTGTCCTTGGCTAC 	14
------------------------------------------------------------------------------------------------------CGGCAAGTCTGTCCTTGGCTA 	2
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTACA 	18
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTAC 	43
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTA 	2

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM520640-18679	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
---------------------------TGAAATGAGATAGAGAACGGAATG 	1
---------------------------TGAAATGAGATAGAGAACGGAAT 	2
------------------------------------------------ATGCAGCCAAGGATGACTTGCCGG 	1
------------------------------------------------ATGCAGCCAAGGATGACTTGC 	1
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	1
--------------------------------------------------GCAGCCAAGGATGACTTGCCGGTA 	3
---------------------------------------------------CAGCCAAGGATGACTTGCC 	9
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	1161
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	4
----------------------------------------------------AGCCAAGGATGACTTGCCGGT 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	20
-----------------------------------------------------GCCAAGGATGACTTGCCGG 	18
-----------------------------------------------------------------------------------------------------------------------------------------------------TCCTTGGCTACGTCTTGTTCT 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM520640-18679	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
--------------------------GGATGCAGCCAAGGATGACT 	1
----------------------------ATGCAGCCAAGGATGACTTGCCGG 	1
----------------------------ATGCAGCCAAGGATGACTTGC 	1
-----------------------------TGCAGCCAAGGATGACTTGCC 	1
-------------------------------CAGCCAAGGATGACTTGCC 	9
-------------------------------CAGCCAAGGATGACTTGCCGG 	1161
-------------------------------CAGCCAAGGATGACTTGCCG 	4
-------------------------------CAGCCAAGGATGACTTGCCGGCT 	2
-------------------------------CAGCCAAGGATGACTTGCCGGC 	5
--------------------------------AGCCAAGGATGACTTGCCGGC 	37
--------------------------------AGCCAAGGATGACTTGCCGG 	20
---------------------------------GCCAAGGATGACTTGCCGG 	18
---------------------------------GCCAAGGATGACTTGCCGGC 	1

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM571077-22529	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
-------------------------------------------------TGCAGCCAAGGATGACTTGCCG 	1
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	1
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	6
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	1040
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	7
---------------------------------------------------CAGCCAAGGATGACTTGCCGGT 	4
---------------------------------------------------CAGCCAAGGATGACTTGCC 	4
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	77
----------------------------------------------------AGCCAAGGATGACTTGCCGGT 	2
-----------------------------------------------------GCCAAGGATGACTTGCCGGT 	1
--------------------------------------------------------------------------------------------------------------------------------------------GGCAAGTTGTCCTTGGCTAC 	2

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM571077-22529	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
---------CTGTGAGGAGGAGAACGGGATG 	7
---------CTGTGAGGAGGAGAACGGGAT 	1
--------------------AGAACGGGATGCAGCCAAGGA 	2
--------------------------GGATGCAGCCAAGGATGAC 	1
-----------------------------TGCAGCCAAGGATGACTTGCCG 	1
-----------------------------TGCAGCCAAGGATGACTTGCC 	1
------------------------------GCAGCCAAGGATGACTTGCCG 	6
-------------------------------CAGCCAAGGATGACTTGCCGG 	1040
-------------------------------CAGCCAAGGATGACTTGCCGGC 	6
-------------------------------CAGCCAAGGATGACTTGCCG 	7
-------------------------------CAGCCAAGGATGACTTGCC 	4
-------------------------------CAGCCAAGGATGACTTGCCGGCT 	1
--------------------------------AGCCAAGGATGACTTGCCGGC 	19
--------------------------------AGCCAAGGATGACTTGCCGG 	77
--------------------------------AGCCAAGGATGACTTGCCGGCT 	1
------------------------------------------------------------------------------------------------------CGGCAAGTCTGTCCTTGGCTAC 	5
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTAC 	75
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTACA 	5
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTA 	2
--------------------------------------------------------------------------------------------------------GCAAGTCTGTCCTTGGCTAC 	5

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Oryza sativa	GSM686039-31370	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
-------------------------------------TAGAGAACGGAATGCAGCCAAGGA 	2
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	326
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	8
---------------------------------------------------CAGCCAAGGATGACTTGCC 	3
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	18
-----------------------------------------------------GCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Oryza sativa	GSM686039-31370	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
---------CTGTGAGGAGGAGAACGGGATG 	1
----------TGTGAGGAGGAGAACGGGATG 	1
--------------AGGAGGAGAACGGGATGCAGCC 	1
--------------------AGAACGGGATGCAGCCAAGGA 	1
---------------------GAACGGGATGCAGCCAAGGATG 	6
------------------------------GCAGCCAAGGATGACTTGCCG 	3
-------------------------------CAGCCAAGGATGACTTGCCGGCT 	1
-------------------------------CAGCCAAGGATGACTTGCCGGC 	8
-------------------------------CAGCCAAGGATGACTTGCCGG 	326
-------------------------------CAGCCAAGGATGACTTGCCG 	8
-------------------------------CAGCCAAGGATGACTTGCC 	3
--------------------------------AGCCAAGGATGACTTGCCGGC 	2
--------------------------------AGCCAAGGATGACTTGCCGG 	18
---------------------------------GCCAAGGATGACTTGCCGG 	1
-----------------------------------------------------------------------------------------------------CCGGCAAGTCTGTCCTTGGCTACA 	1
-----------------------------------------------------------------------------------------------------CCGGCAAGTCTGTCCTTGGCTAC 	3
------------------------------------------------------------------------------------------------------CGGCAAGTCTGTCCTTGGCTAC 	4
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTACA 	30
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTAC 	79
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTA 	2
--------------------------------------------------------------------------------------------------------GCAAGTCTGTCCTTGGCTAC 	3

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Oryza sativa	GSM520636-18672	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	14

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Oryza sativa	GSM520636-18672	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	14

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Oryza sativa	GSM520635-18669	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
----------------------------------------AGAACGGAATGCAGCCAAGGATGA 	2
--------------------------------------------------GCAGCCAAGGATGACTTGCCGGTA 	5
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	12
--------------------------------------------------------------GACTTGCCGGTACGTGTATGCATGT 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Oryza sativa	GSM520635-18669	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-------------------------------CAGCCAAGGATGACTTGCCGGC 	1
-------------------------------CAGCCAAGGATGACTTGCCGG 	12
-------------------------------------------------------------------------------------------------------GGCAAGTCTGTCCTTGGCTA 	1

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Oryza sativa	GSM520637-18674	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	32
-----------------------------------------------------GCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Oryza sativa	GSM520637-18674	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	32
--------------------------------AGCCAAGGATGACTTGCCGGC 	1
---------------------------------GCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Oryza sativa	GSM693279	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
-------------------------CGTGAAATGAGATAGAGAACGGAA 	2
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	1
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	324
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	2
---------------------------------------------------CAGCCAAGGATGACTTGCC 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	10
----------------------------------------------------AGCCAAGGATGACTTGCCG 	1
------------------------------------------------------------------------------------------------------------------------------------------CCGGCAAGTTGTCCTTGGCTA 	1
-------------------------------------------------------------------------------------------------------------------------------------------CGGCAAGTTGTCCTTGGCTAC 	1

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Oryza sativa	GSM693279	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-----------------------------TGCAGCCAAGGATGACTTGCC 	1
------------------------------GCAGCCAAGGATGACTTGCCG 	1
-------------------------------CAGCCAAGGATGACTTGCCGG 	324
-------------------------------CAGCCAAGGATGACTTGCCG 	2
-------------------------------CAGCCAAGGATGACTTGCCGGC 	1
-------------------------------CAGCCAAGGATGACTTGCC 	1
--------------------------------AGCCAAGGATGACTTGCCGG 	10
--------------------------------AGCCAAGGATGACTTGCCGGC 	6
--------------------------------AGCCAAGGATGACTTGCCG 	1
---------------------------------GCCAAGGATGACTTGCCGGC 	1

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Oryza sativa	GSM520639-18678	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACG	up	1	0

Secondary structure

TGAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTTGCATTTAG
------------------------------------------------ATGCAGCCAAGGATGACTTGC 	2
-------------------------------------------------TGCAGCCAAGGATGACTTGCC 	2
--------------------------------------------------GCAGCCAAGGATGACTTGCCGGTA 	4
---------------------------------------------------CAGCCAAGGATGACTTGCC 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	2342
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	43
-----------------------------------------------------GCCAAGGATGACTTGCCGG 	213

Overlaps with: MNEST045785 MNEST046140 MNEST046720
Overlaps with miRBase pre-miRNAs: osa-MIR169b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Oryza sativa	GSM520639-18678	CAGCCAAGGATGACTTGCCGG	GGCAAGTCTGTCCTTGGCTACA	up	1	1

Secondary structure

TGCCATGCACTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGCT
-------------------------GGGATGCAGCCAAGGATGACT 	1
----------------------------ATGCAGCCAAGGATGACTTGC 	2
-----------------------------TGCAGCCAAGGATGACTTGCC 	2
-------------------------------CAGCCAAGGATGACTTGCC 	1
-------------------------------CAGCCAAGGATGACTTGCCGG 	2342
-------------------------------CAGCCAAGGATGACTTGCCGGCT 	4
-------------------------------CAGCCAAGGATGACTTGCCGGC 	8
--------------------------------AGCCAAGGATGACTTGCCGG 	43
--------------------------------AGCCAAGGATGACTTGCCGGC 	143
---------------------------------GCCAAGGATGACTTGCCGG 	213

Overlaps with: MNEST045191
Overlaps with miRBase pre-miRNAs: osa-MIR169c
HuntMi prediction: true miRNA