miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Solanum lycopersicum



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 CAGCCAAGGATGACTTGCCGG GGCAAGTCATTTTTGGCTACA up 1 0


Secondary structure

TCATTGAATTGCAGCCAAGGATGACTTGCCGGCAAGCTCGATCAATTCTGCTTCATGTCTGGCAAGTCATTTTTGGCTACATATCTGCC
----------GCAGCCAAGGATGACTTGCCG 	1
-----------CAGCCAAGGATGACTTGCCGG 	336
-----------CAGCCAAGGATGACTTGCCG 	9
-----------CAGCCAAGGATGACTTGCC 	2
------------AGCCAAGGATGACTTGCCGG 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTTTTGGCTATA up 1 0


Secondary structure

CTAAAATTTTTGGTCTATAAGGTTTGCATGAAGTTGAAGAGAGTCAAGTTGCAGCCAAGGATGACTTGCCGGACCAAAAGTTGTGACCATTTTCTAGTTCCGGCAAGTTGTTTTTGGCTATAAGTTTGCTCTCTTCTTCTCATGTTATCCTCGTTAGACCTATTTTTTCC
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGGA 	88
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	336
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	9
---------------------------------------------------CAGCCAAGGATGACTTGCC 	2
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	11
----------------------------------------------------------------CTTGCCGGACCAAAAGTTGTGA 	1

Overlaps with: MNEST041534 MNEST054547
Overlaps with miRBase pre-miRNAs: sly-MIR169a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304985 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTATA up 1 0


Secondary structure

TAGTCTATGAGGTTTGCATGAAGATGTAGAGAGTGAAGTTGCAGCCAAGGATGACTTGCCGGACCATAAATTGCTAGGGTTTTATAGTTTCGGCAAGTTGTTCTTGGCTATAGTTTGCTCTCTTCTTCTCATGTCATCCTCGTTAGACCT
----------------------------------------GCAGCCAAGGATGACTTGCCG 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGGA 	88
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	336
-----------------------------------------CAGCCAAGGATGACTTGCCG 	9
-----------------------------------------CAGCCAAGGATGACTTGCC 	2
------------------------------------------AGCCAAGGATGACTTGCCGG 	11
-------------------------------------------------------------------------------------------GGCAAGTTGTTCTTGGCTAT 	2


HuntMi prediction: true miRNA