miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGCCAAGGATGACTTGCCGG

selected species: Vitis vinifera

17 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCCTGGCTACA	up	2	0

Secondary structure

TTTGTCTATGAGTTTTGCATGAAGAAGTAGAAAGTGGATTGCAGCCAAGGATGACTTGCCGGCACTTGGCATTAGGCACCATCGATCATCTTCCCGGCAAGTTGTTCCTGGCTACATTCTGCTCTCTTCTTTTCATGTGAGCCTCTGAAGACCC
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041615 MNEST054821
Overlaps with miRBase pre-miRNAs: vvi-MIR169s
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGGGTCTTGCATGCAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAAGAGGCCGGCCTCTTCCCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGTTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041607 MNEST054813
Overlaps with miRBase pre-miRNAs: vvi-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGAGTCTTGCATGAAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAATAGACCGGCCTCTTCTCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGCTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041606 MNEST054812
Overlaps with miRBase pre-miRNAs: vvi-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACA	up	1	0

Secondary structure

CCCTTGGTGTTTGGTCTTAGAGTCTTGCATGAAGAGGTTGAGAGTGGAATGCAGCCAAGGATGACTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATATGCTTTCACATATATAGTGAACCCTGGCAAGTTGTCCTTGGCTACATTTGATTCTCTTCTTCTTATGTGAGTCTCCATAGGCCTGTCAGTTATC
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041597 MNEST054803
Overlaps with miRBase pre-miRNAs: vvi-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACA	up	1	0

Secondary structure

CTCCCTTCAGTGCCTTGCATTAAGATGTAGGGAGTAGAATGCAGCCAAGGATGACTTGCCGGAGATGGGGCATTCCTCGTTAATCCGGCAAGTTGTCCTTGGCTACATTGGGCTCTCTTCTTCTCATGTAAGGCCCTGCAATGGC
-------------------------TGTAGGGAGTAGAATGCAGC 	5
--------------------------------AGTAGAATGCAGCCAAGGATG 	1
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041599 MNEST054805
Overlaps with miRBase pre-miRNAs: vvi-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458930-2718	CAGCCAAGGATGACTTGCCGG	GGCGAGTCATTCTTAGCTACA	up	2	0

Secondary structure

TTTCTTTTCCTTCATCTGAGGTCTTGCATGTGGGGATGAGGTTATGTGGTGCAGCCAAGGATGACTTGCCGGCAACTCCCTTTATTGTACTCATGCATGCTCATACTTATACTGTTGTGGGCATCATTTAAGTGGCAAAAATGGTGGTCGGCGAGTCATTCTTAGCTACATTTCTGCCTCATCTTCTCATGCTAGATTTATGATGATAATGCCTAATA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	5

Overlaps with: MNEST041619 MNEST054825
Overlaps with miRBase pre-miRNAs: vvi-MIR169w
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGGGTCTTGCATGCAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAAGAGGCCGGCCTCTTCCCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGTTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	34
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041607 MNEST054813
Overlaps with miRBase pre-miRNAs: vvi-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGAGTCTTGCATGAAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAATAGACCGGCCTCTTCTCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGCTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	34
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041606 MNEST054812
Overlaps with miRBase pre-miRNAs: vvi-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACA	up	1	0

Secondary structure

CCCTTGGTGTTTGGTCTTAGAGTCTTGCATGAAGAGGTTGAGAGTGGAATGCAGCCAAGGATGACTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATATGCTTTCACATATATAGTGAACCCTGGCAAGTTGTCCTTGGCTACATTTGATTCTCTTCTTCTTATGTGAGTCTCCATAGGCCTGTCAGTTATC
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	34
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041597 MNEST054803
Overlaps with miRBase pre-miRNAs: vvi-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCCTGGCTACA	up	2	0

Secondary structure

TTTGTCTATGAGTTTTGCATGAAGAAGTAGAAAGTGGATTGCAGCCAAGGATGACTTGCCGGCACTTGGCATTAGGCACCATCGATCATCTTCCCGGCAAGTTGTTCCTGGCTACATTCTGCTCTCTTCTTTTCATGTGAGCCTCTGAAGACCC
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	34
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1
------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041615 MNEST054821
Overlaps with miRBase pre-miRNAs: vvi-MIR169s
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACA	up	1	0

Secondary structure

CTCCCTTCAGTGCCTTGCATTAAGATGTAGGGAGTAGAATGCAGCCAAGGATGACTTGCCGGAGATGGGGCATTCCTCGTTAATCCGGCAAGTTGTCCTTGGCTACATTGGGCTCTCTTCTTCTCATGTAAGGCCCTGCAATGGC
-------------------------TGTAGGGAGTAGAATGCAGC 	10
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	34
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1
------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041599 MNEST054805
Overlaps with miRBase pre-miRNAs: vvi-MIR169c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Vitis vinifera	GSM458929-2717	CAGCCAAGGATGACTTGCCGG	GGCGAGTCATTCTTAGCTACA	up	2	0

Secondary structure

TTTCTTTTCCTTCATCTGAGGTCTTGCATGTGGGGATGAGGTTATGTGGTGCAGCCAAGGATGACTTGCCGGCAACTCCCTTTATTGTACTCATGCATGCTCATACTTATACTGTTGTGGGCATCATTTAAGTGGCAAAAATGGTGGTCGGCGAGTCATTCTTAGCTACATTTCTGCCTCATCTTCTCATGCTAGATTTATGATGATAATGCCTAATA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	34
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	1

Overlaps with: MNEST041619 MNEST054825
Overlaps with miRBase pre-miRNAs: vvi-MIR169w
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Vitis vinifera	GSM458928-2716	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGGGTCTTGCATGCAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAAGAGGCCGGCCTCTTCCCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGTTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGGA 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	23
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1

Overlaps with: MNEST041607 MNEST054813
Overlaps with miRBase pre-miRNAs: vvi-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Vitis vinifera	GSM458928-2716	CAGCCAAGGATGACTTGCCGG	GGCAGGTTGTCCTTGGCTACC	up	1	0

Secondary structure

CGTTTGGTGTTTGGTCTAAGAGTCTTGCATGAAGAGGTGGAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAATAGACCGGCCTCTTCTCATGGTGTCCCTGGCAGGTTGTCCTTGGCTACCTTTCGCTCTCTTCTTCTTATGTGAGGCTGTGTAGACCTGTATAATGAA
---------------------------------------------------CAGCCAAGGATGACTTGCCGGA 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	23
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1

Overlaps with: MNEST041606 MNEST054812
Overlaps with miRBase pre-miRNAs: vvi-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Vitis vinifera	GSM458928-2716	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTCCTTGGCTACA	up	1	0

Secondary structure

CCCTTGGTGTTTGGTCTTAGAGTCTTGCATGAAGAGGTTGAGAGTGGAATGCAGCCAAGGATGACTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATATGCTTTCACATATATAGTGAACCCTGGCAAGTTGTCCTTGGCTACATTTGATTCTCTTCTTCTTATGTGAGTCTCCATAGGCCTGTCAGTTATC
---------------------------------------------------CAGCCAAGGATGACTTGCCGGA 	1
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	23
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1
-----------------------------------------------------------------------------------AGTGAGAAGAGAAGAGGCTA 	1

Overlaps with: MNEST041597 MNEST054803
Overlaps with miRBase pre-miRNAs: vvi-MIR169a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Vitis vinifera	GSM458928-2716	CAGCCAAGGATGACTTGCCGG	GGCAAGTTGTTCCTGGCTACA	up	2	0

Secondary structure

TTTGTCTATGAGTTTTGCATGAAGAAGTAGAAAGTGGATTGCAGCCAAGGATGACTTGCCGGCACTTGGCATTAGGCACCATCGATCATCTTCCCGGCAAGTTGTTCCTGGCTACATTCTGCTCTCTTCTTTTCATGTGAGCCTCTGAAGACCC
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	23
-----------------------------------------CAGCCAAGGATGACTTGCCG 	1

Overlaps with: MNEST041615 MNEST054821
Overlaps with miRBase pre-miRNAs: vvi-MIR169s
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Vitis vinifera	GSM458928-2716	CAGCCAAGGATGACTTGCCGG	GGCGAGTCATTCTTAGCTACA	up	2	0

Secondary structure

TTTCTTTTCCTTCATCTGAGGTCTTGCATGTGGGGATGAGGTTATGTGGTGCAGCCAAGGATGACTTGCCGGCAACTCCCTTTATTGTACTCATGCATGCTCATACTTATACTGTTGTGGGCATCATTTAAGTGGCAAAAATGGTGGTCGGCGAGTCATTCTTAGCTACATTTCTGCCTCATCTTCTCATGCTAGATTTATGATGATAATGCCTAATA
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	23
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	1

Overlaps with: MNEST041619 MNEST054825
Overlaps with miRBase pre-miRNAs: vvi-MIR169w
HuntMi prediction: true miRNA