miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGGTGGAACACGATGCAATTT

selected species: Mus musculus



14 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539877-5198 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	4
---------------------CAGGTGGAACACGATGCAATTT 	5
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539838 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
------------------TATCAGGTGGAACACGATGCA 	1
-------------------ATCAGGTGGAACACGATGCAAT 	1
---------------------CAGGTGGAACACGATGCAATTTT 	152
---------------------CAGGTGGAACACGATGCAATTT 	265
---------------------CAGGTGGAACACGATGCAATT 	24
---------------------CAGGTGGAACACGATGCAAT 	3
----------------------AGGTGGAACACGATGCAATTTT 	6
----------------------AGGTGGAACACGATGCAATTT 	2
---------------------------------------------------------------AAATTGCACGGTATCCATCTGTA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	15
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	111
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	21
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	11
----------------------------------------------------------------AATTGCACGGTATCCATCT 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAAA 	1
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	13
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	65
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	2
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAAA 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539850 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
------------------TATCAGGTGGAACACGATGCAATT 	1
------------------TATCAGGTGGAACACGATGCA 	1
-------------------ATCAGGTGGAACACGATGCA 	1
-------------------ATCAGGTGGAACACGATGCAAT 	2
--------------------TCAGGTGGAACACGATGCAATTT 	1
---------------------CAGGTGGAACACGATGCAATTTT 	255
---------------------CAGGTGGAACACGATGCAATTT 	375
---------------------CAGGTGGAACACGATGCAATT 	40
---------------------CAGGTGGAACACGATGCAAT 	7
---------------------CAGGTGGAACACGATGCAA 	3
----------------------AGGTGGAACACGATGCAATTTTG 	1
----------------------AGGTGGAACACGATGCAATTTT 	9
----------------------AGGTGGAACACGATGCAATTT 	2
---------------------------------------------------------------AAATTGCACGGTATCCATCTGTAA 	1
---------------------------------------------------------------AAATTGCACGGTATCCATCT 	2
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	26
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	59
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	24
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	7
----------------------------------------------------------------AATTGCACGGTATCCATCT 	90
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	4
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	19
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	10
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	2
------------------------------------------------------------------TTGCACGGTATCCATCTGTA 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539869 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTTG 	1
---------------------CAGGTGGAACACGATGCAATTTT 	4
---------------------CAGGTGGAACACGATGCAATTT 	11
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	3
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	2
----------------------------------------------------------------AATTGCACGGTATCCATCT 	1
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539864 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
-------------------ATCAGGTGGAACACGATGCAATT 	3
-------------------ATCAGGTGGAACACGATGC 	1
-------------------ATCAGGTGGAACACGATGCAATTT 	1
--------------------TCAGGTGGAACACGATGCAATTT 	3
---------------------CAGGTGGAACACGATGCAATTTT 	422
---------------------CAGGTGGAACACGATGCAA 	13
---------------------CAGGTGGAACACGATGCAATTT 	785
---------------------CAGGTGGAACACGATGCAATT 	73
---------------------CAGGTGGAACACGATGCAAT 	8
----------------------AGGTGGAACACGATGCAATTT 	11
----------------------AGGTGGAACACGATGCAATTTT 	9
---------------------------------------------------------------AAATTGCACGGTATCCATCT 	2
---------------------------------------------------------------AAATTGCACGGTATCCATCTGT 	2
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	36
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	216
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	20
----------------------------------------------------------------AATTGCACGGTATCCATCT 	283
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	109
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	162
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	51
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	45
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	16
------------------------------------------------------------------TTGCACGGTATCCATCTGTA 	3


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539872 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	48
---------------------CAGGTGGAACACGATGCAATTT 	66
---------------------CAGGTGGAACACGATGCAATT 	9
---------------------CAGGTGGAACACGATGCAAT 	3
---------------------CAGGTGGAACACGATGCAA 	1
----------------------AGGTGGAACACGATGCAATTT 	1
----------------------AGGTGGAACACGATGCAATTTT 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	24
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	8
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	1
----------------------------------------------------------------AATTGCACGGTATCCATCT 	12
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	28


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539861 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTTG 	1
---------------------CAGGTGGAACACGATGCAATTTT 	349
---------------------CAGGTGGAACACGATGCAATTT 	405
---------------------CAGGTGGAACACGATGCAATT 	37
---------------------CAGGTGGAACACGATGCAA 	2
---------------------CAGGTGGAACACGATGCAAT 	6
----------------------AGGTGGAACACGATGCAATTTT 	11
----------------------AGGTGGAACACGATGCAATTT 	7
---------------------------------------------------------------AAATTGCACGGTATCCATC 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	18
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	112
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	26
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	12
----------------------------------------------------------------AATTGCACGGTATCCATCT 	100
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	14
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	43
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	6
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	2


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539847 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	29
---------------------CAGGTGGAACACGATGCAATTT 	70
---------------------CAGGTGGAACACGATGCAATT 	20
---------------------CAGGTGGAACACGATGCAAT 	2
---------------------CAGGTGGAACACGATGCAA 	1
----------------------AGGTGGAACACGATGCAATTTT 	1
----------------------AGGTGGAACACGATGCAATTT 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	5
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	11
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	4
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	1
----------------------------------------------------------------AATTGCACGGTATCCATCT 	35
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	9
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	3
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539878 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	6
---------------------CAGGTGGAACACGATGCAATTT 	13
---------------------CAGGTGGAACACGATGCAATT 	3
---------------------CAGGTGGAACACGATGCAA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	2
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	7
----------------------------------------------------------------AATTGCACGGTATCCATCT 	2
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	2


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539875 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
------------------TATCAGGTGGAACACGATGCAA 	1
---------------------CAGGTGGAACACGATGCAATTTT 	130
---------------------CAGGTGGAACACGATGCAATTT 	215
---------------------CAGGTGGAACACGATGCAATT 	14
---------------------CAGGTGGAACACGATGCAAT 	3
----------------------AGGTGGAACACGATGCAATTTT 	2
----------------------AGGTGGAACACGATGCAATTT 	2
-------------------------------------------TGGTTGGTGTAATAGGAGGAAA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	10
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	43
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	11
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	3
----------------------------------------------------------------AATTGCACGGTATCCATCT 	45
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	31
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	5
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	1
------------------------------------------------------------------TTGCACGGTATCCATCTGTA 	2


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539857 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
------------------TATCAGGTGGAACACGATGCA 	1
--------------------TCAGGTGGAACACGATGCAATTT 	2
--------------------TCAGGTGGAACACGATGCAAT 	1
---------------------CAGGTGGAACACGATGCAATTTTG 	1
---------------------CAGGTGGAACACGATGCAATTTT 	371
---------------------CAGGTGGAACACGATGCAATTT 	668
---------------------CAGGTGGAACACGATGCAATT 	80
---------------------CAGGTGGAACACGATGCAAT 	11
---------------------CAGGTGGAACACGATGCAA 	14
----------------------AGGTGGAACACGATGCAATTTT 	8
----------------------AGGTGGAACACGATGCAATTT 	1
----------------------AGGTGGAACACGATGCAATT 	1
-------------------------------------------TGGTTGGTGTAATAGGAGGAAA 	1
---------------------------------------------------------------AAATTGCACGGTATCCATCTGTA 	1
---------------------------------------------------------------AAATTGCACGGTATCCATCTGT 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAAA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	28
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	151
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	21
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	13
----------------------------------------------------------------AATTGCACGGTATCCATCT 	116
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	20
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	78
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	13
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	6
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAAAC 	1
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAAA 	3
------------------------------------------------------------------TTGCACGGTATCCATCTGTA 	5


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539867 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	8
---------------------CAGGTGGAACACGATGCAATTT 	9
---------------------------------------------------------------AAATTGCACGGTATCCATCTGTA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	4
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	1
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	2
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM539876 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
------------------TATCAGGTGGAACACGATGCAA 	1
-------------------ATCAGGTGGAACACGATGCAATTTT 	1
--------------------TCAGGTGGAACACGATGCAATTT 	1
---------------------CAGGTGGAACACGATGCAATTTT 	124
---------------------CAGGTGGAACACGATGCAATTT 	173
---------------------CAGGTGGAACACGATGCAATT 	16
---------------------CAGGTGGAACACGATGCAAT 	2
---------------------CAGGTGGAACACGATGCAA 	1
----------------------AGGTGGAACACGATGCAATTTT 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAAA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	8
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	50
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	9
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	2
----------------------------------------------------------------AATTGCACGGTATCCATCT 	35
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAAA 	1
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	6
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	20
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	8
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	3
------------------------------------------------------------------TTGCACGGTATCCATCTGTA 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM539874 CAGGTGGAACACGATGCAATTT ATTGCACGGTATCCATCTGTA up 0 3


Secondary structure

AATGAACTGTTTTGCTGTTATCAGGTGGAACACGATGCAATTTTGGTTGGTGTAATAGGAGGAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCTATGTG
---------------------CAGGTGGAACACGATGCAATTTT 	49
---------------------CAGGTGGAACACGATGCAATTT 	65
---------------------CAGGTGGAACACGATGCAATT 	8
---------------------CAGGTGGAACACGATGCAAT 	1
---------------------CAGGTGGAACACGATGCAA 	1
----------------------------------------------------------------AATTGCACGGTATCCATCTGTAA 	6
----------------------------------------------------------------AATTGCACGGTATCCATCTGTA 	21
----------------------------------------------------------------AATTGCACGGTATCCATCTGT 	5
----------------------------------------------------------------AATTGCACGGTATCCATCTG 	1
----------------------------------------------------------------AATTGCACGGTATCCATCT 	12
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTAA 	5
-----------------------------------------------------------------ATTGCACGGTATCCATCTGTA 	14
-----------------------------------------------------------------ATTGCACGGTATCCATCTGT 	3
-----------------------------------------------------------------ATTGCACGGTATCCATCTG 	1


Overlaps with: MNEST032034 MNEST032035
Overlaps with miRBase pre-miRNAs: mmu-mir-363
HuntMi prediction: true miRNA