miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CAGTCTTACTATGTAGCCCTA

selected species: Mus musculus



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539835 CAGTCTTACTATGTAGCCCTA GGGCTACATAGTGAGAACCTGCC down 1 2


Secondary structure

ATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTAGATGGCCTAGAACTCCCTA
------------------------------------------------------------CAGTCTTACTATGTAGCCCTA 	12

Overlaps with: MNEST005213
Overlaps with miRBase pre-miRNAs: mmu-mir-1191
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527277-2110 CAGTCTTACTATGTAGCCCTA GGGCTACATAGTGAGAACCTGCC down 1 2


Secondary structure

ATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTAGATGGCCTAGAACTCCCTA
------------------------------------------------------------CAGTCTTACTATGTAGCCCTAG 	1
------------------------------------------------------------CAGTCTTACTATGTAGCCCTA 	11
------------------------------------------------------------CAGTCTTACTATGTAGCCC 	1

Overlaps with: MNEST005213
Overlaps with miRBase pre-miRNAs: mmu-mir-1191
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539873 CAGTCTTACTATGTAGCCCTA GGGCTACATAGTGAGAACCTGCC down 1 2


Secondary structure

ATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTAGATGGCCTAGAACTCCCTA
------------------------------------------------------------CAGTCTTACTATGTAGCCCTA 	5
------------------------------------------------------------CAGTCTTACTATGTAGCCCTAG 	1

Overlaps with: MNEST005213
Overlaps with miRBase pre-miRNAs: mmu-mir-1191
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539867 CAGTCTTACTATGTAGCCCTA GGGCTACATAGTGAGAACCTGCC down 1 2


Secondary structure

ATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTAGATGGCCTAGAACTCCCTA
-----------------------------------------------------------GCAGTCTTACTATGTAGCCCTA 	1
------------------------------------------------------------CAGTCTTACTATGTAGCCCTA 	6

Overlaps with: MNEST005213
Overlaps with miRBase pre-miRNAs: mmu-mir-1191
HuntMi prediction: true miRNA