miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGTGCAATATTAAAAGGGCAT

selected species: Danio rerio



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACT down 4 0


Secondary structure

GGGAGAGGTCTGTACGGTGATATTGACCATGTTTTGTCCATTGCCCTTTTTCTGTTGTACTACTGGCCAATCAGAAGAGCAGTGCAATATTAAAAGGGCATTGGCTGATAGAACAGAGTCCTTCACCTCTCACCCTCTCC
------------------------------------------GCCCTTTTTCTGTTGTACTACT 	3
------------------------------------------GCCCTTTTTCTGTTGTACTAC 	4
------------------------------------------GCCCTTTTTCTGTTGTACTA 	1
------------------------------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	1
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	3
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	423
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	32
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGC 	10
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGG 	2
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	7
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	10
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	1


Overlaps with: MNEST034292
Overlaps with miRBase pre-miRNAs: dre-mir-130c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACTGTG down 3 3


Secondary structure

TTTACTGTTGTTGTTGACCAGGGCCCTTTTTCTGTTGTACTACTGTGCAGTCAGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGACAAAAAAAGAGG
----------------------GCCCTTTTTCTGTTGTACTACT 	3
----------------------GCCCTTTTTCTGTTGTACTAC 	4
----------------------GCCCTTTTTCTGTTGTACTA 	1
----------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	1
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	3
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	423
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	32
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	10
-----------------------------------------------------------CAGTGCAATATTAAAAGGG 	2
------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	7
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	10
------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACT down 4 0


Secondary structure

GGGAGAGGTCTGTACGGTGATATTGACCATGTTTTGTCCATTGCCCTTTTTCTGTTGTACTACTGGCCAATCAGAAGAGCAGTGCAATATTAAAAGGGCATTGGCTGATAGAACAGAGTCCTTCACCTCTCACCCTCTCC
------------------------------------------GCCCTTTTTCTGTTGTACTACT 	2
------------------------------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	5
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	190
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	2696
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	33
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGC 	2
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGG 	2
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	263
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	125
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	3
---------------------------------------------------------------------------------GTGCAATATTAAAAGGGCAT 	1
---------------------------------------------------------------------------------GTGCAATATTAAAAGGGCA 	1
---------------------------------------------------------------------------------GTGCAATATTAAAAGGGCATT 	1


Overlaps with: MNEST034292
Overlaps with miRBase pre-miRNAs: dre-mir-130c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACTGTG down 3 3


Secondary structure

TTTACTGTTGTTGTTGACCAGGGCCCTTTTTCTGTTGTACTACTGTGCAGTCAGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGACAAAAAAAGAGG
----------------------GCCCTTTTTCTGTTGTACTACT 	2
----------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	5
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	190
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	2696
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	33
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	2
-----------------------------------------------------------CAGTGCAATATTAAAAGGG 	2
------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	263
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	125
------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	3
-------------------------------------------------------------GTGCAATATTAAAAGGGCAT 	1
-------------------------------------------------------------GTGCAATATTAAAAGGGCA 	1
-------------------------------------------------------------GTGCAATATTAAAAGGGCATT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACT down 4 0


Secondary structure

GGGAGAGGTCTGTACGGTGATATTGACCATGTTTTGTCCATTGCCCTTTTTCTGTTGTACTACTGGCCAATCAGAAGAGCAGTGCAATATTAAAAGGGCATTGGCTGATAGAACAGAGTCCTTCACCTCTCACCCTCTCC
------------------------------------------GCCCTTTTTCTGTTGTACTAC 	20
------------------------------------------GCCCTTTTTCTGTTGTACTA 	1
------------------------------------------GCCCTTTTTCTGTTGTACTACT 	73
-------------------------------------------CCCTTTTTCTGTTGTACTACTG 	1
-------------------------------------------CCCTTTTTCTGTTGTACTACT 	1
--------------------------------------------CCTTTTTCTGTTGTACTACTG 	1
------------------------------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	5
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	7718
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	250
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGC 	55
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	675
-------------------------------------------------------------------------------CAGTGCAATATTAAAAGGG 	4
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	683
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	3
--------------------------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	139
---------------------------------------------------------------------------------GTGCAATATTAAAAGGGCAT 	1
---------------------------------------------------------------------------------GTGCAATATTAAAAGGGCATT 	1


Overlaps with: MNEST034292
Overlaps with miRBase pre-miRNAs: dre-mir-130c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540646 CAGTGCAATATTAAAAGGGCAT GCCCTTTTTCTGTTGTACTACTGTG down 3 3


Secondary structure

TTTACTGTTGTTGTTGACCAGGGCCCTTTTTCTGTTGTACTACTGTGCAGTCAGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGACAAAAAAAGAGG
----------------------GCCCTTTTTCTGTTGTACTAC 	20
----------------------GCCCTTTTTCTGTTGTACTA 	1
----------------------GCCCTTTTTCTGTTGTACTACT 	73
-----------------------CCCTTTTTCTGTTGTACTACTG 	1
-----------------------CCCTTTTTCTGTTGTACTACT 	1
------------------------CCTTTTTCTGTTGTACTACTG 	1
----------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	5
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	7718
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	250
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	55
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	675
-----------------------------------------------------------CAGTGCAATATTAAAAGGG 	4
------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	683
------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	3
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	139
-------------------------------------------------------------GTGCAATATTAAAAGGGCAT 	1
-------------------------------------------------------------GTGCAATATTAAAAGGGCATT 	1



HuntMi prediction: true miRNA