miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAGTGCAATATTAAAAGGGCAT

selected species: Gallus gallus

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Gallus gallus	GSM523741_layer_clean_reads_field_16-30	CAGTGCAATATTAAAAGGGCAT	GCCCTTTTTCTGTTGTACTACT	down	4	0

Secondary structure

CTGAAGTATGCTGTTGTCCAGAGCCCTTTTTCTGTTGTACTACTGGCAATTATGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGGCAGAAACATGAC
----------------------GCCCTTTTTCTGTTGTACTACT 	3
----------------------GCCCTTTTTCTGTTGTACTAC 	1
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	5
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	19
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	2630
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	177
------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	2
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	73

Overlaps with: MNEST026459
Overlaps with miRBase pre-miRNAs: gga-mir-130a tgu-mir-130a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Gallus gallus	GSM388803	CAGTGCAATATTAAAAGGGCAT	GCCCTTTTTCTGTTGTACTACT	down	4	0

Secondary structure

CTGAAGTATGCTGTTGTCCAGAGCCCTTTTTCTGTTGTACTACTGGCAATTATGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGGCAGAAACATGAC
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	1639
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	277
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	1079
-----------------------------------------------------------CAGTGCAATATTAAAAGGG 	73
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	62
------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	79
------------------------------------------------------------AGTGCAATATTAAAAGGGC 	26
---------------------------------------------------------------------------------TGGCTGGCAGAAACATGAC 	22

Overlaps with: MNEST026459
Overlaps with miRBase pre-miRNAs: gga-mir-130a tgu-mir-130a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Gallus gallus	GSM523740_broiler_clean_reads_field_16-30	CAGTGCAATATTAAAAGGGCAT	GCCCTTTTTCTGTTGTACTACT	down	4	0

Secondary structure

CTGAAGTATGCTGTTGTCCAGAGCCCTTTTTCTGTTGTACTACTGGCAATTATGATGAGCAGTGCAATATTAAAAGGGCATTGGCTGGCAGAAACATGAC
----------------------GCCCTTTTTCTGTTGTACTA 	1
----------------------GCCCTTTTTCTGTTGTACTACT 	3
----------------------------------------------------------GCAGTGCAATATTAAAAGGGCAT 	1
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCA 	130
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCATT 	313
-----------------------------------------------------------CAGTGCAATATTAAAAGGGC 	100
-----------------------------------------------------------CAGTGCAATATTAAAAGGGCAT 	10933
-----------------------------------------------------------CAGTGCAATATTAAAAGGG 	5
------------------------------------------------------------AGTGCAATATTAAAAGGGCA 	19
------------------------------------------------------------AGTGCAATATTAAAAGGGCATT 	9
------------------------------------------------------------AGTGCAATATTAAAAGGGCAT 	281
--------------------------------------------------------------TGCAATATTAAAAGGGCAT 	1

Overlaps with: MNEST026459
Overlaps with miRBase pre-miRNAs: gga-mir-130a tgu-mir-130a
HuntMi prediction: true miRNA