miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAGTGCAATGTTAAAAGGGCAT

selected species: Danio rerio



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 CAGTGCAATGTTAAAAGGGCAT GCCCCTTTTATATTGTACTACT down 3 0


Secondary structure

GATTGTGTACTGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGATTTTTCTCA
----------------------GCCCCTTTTATATTGTACTACT 	8
----------------------GCCCCTTTTATATTGTACTAC 	1
------------------------CCCTTTTATATTGTACTACT 	2
---------------------------TTTTATATTGTACTACTGATA 	1
------------------------------------------------------------AAGCAGTGCAATGTTAAAAGGGC 	1
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCATT 	2
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCAT 	58
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCA 	8
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGC 	9
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCATT 	2

Overlaps with: MNEST034289 MNEST034290
Overlaps with miRBase pre-miRNAs: dre-mir-130a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540642 CAGTGCAATGTTAAAAGGGCAT GCCCCTTTTATATTGTACTACT down 3 0


Secondary structure

GATTGTGTACTGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGATTTTTCTCA
----------------------------------------------------------TAAAGCAGTGCAATGTTAAAAGG 	1
------------------------------------------------------------AAGCAGTGCAATGTTAAAAGGG 	1
-------------------------------------------------------------AGCAGTGCAATGTTAAAAGGGC 	1
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGCAT 	2
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCATT 	95
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCAT 	98
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCA 	3
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGC 	1
---------------------------------------------------------------CAGTGCAATGTTAAAAGGG 	1
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCATT 	12
-------------------------------------------------------------------GCAATGTTAAAAGGGCATT 	1

Overlaps with: MNEST034289 MNEST034290
Overlaps with miRBase pre-miRNAs: dre-mir-130a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 CAGTGCAATGTTAAAAGGGCAT GCCCCTTTTATATTGTACTACT down 3 0


Secondary structure

GATTGTGTACTGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGATTTTTCTCA
-----------------------------------------------------------AAAGCAGTGCAATGTTAAAAGGG 	1
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGCA 	2
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGG 	1
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGCAT 	1
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCAT 	319
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGC 	1
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCATT 	91
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCA 	26
---------------------------------------------------------------CAGTGCAATGTTAAAAGGG 	1
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCATT 	7
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCAT 	1
------------------------------------------------------------------TGCAATGTTAAAAGGGCAT 	1

Overlaps with: MNEST034289 MNEST034290
Overlaps with miRBase pre-miRNAs: dre-mir-130a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 CAGTGCAATGTTAAAAGGGCAT GCCCCTTTTATATTGTACTACT down 3 0


Secondary structure

GATTGTGTACTGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGATTTTTCTCA
----------------------GCCCCTTTTATATTGTACTACT 	33
----------------------GCCCCTTTTATATTGTACTAC 	5
-----------------------CCCCTTTTATATTGTACTACT 	8
------------------------CCCTTTTATATTGTACTACT 	4
-------------------------CCTTTTATATTGTACTACT 	1
---------------------------TTTTATATTGTACTACTGATAA 	4
---------------------------TTTTATATTGTACTACTGATA 	1
---------------------------TTTTATATTGTACTACTGATAACC 	1
---------------------------TTTTATATTGTACTACTGATAAC 	4
----------------------------------------------------------TAAAGCAGTGCAATGTTAAAAG 	5
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGCA 	1
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGC 	2
--------------------------------------------------------------GCAGTGCAATGTTAAAAGGGCAT 	2
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCAT 	839
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGC 	22
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCATT 	239
---------------------------------------------------------------CAGTGCAATGTTAAAAGGGCA 	31
---------------------------------------------------------------CAGTGCAATGTTAAAAGGG 	3
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCAT 	2
----------------------------------------------------------------AGTGCAATGTTAAAAGGGCATT 	7

Overlaps with: MNEST034289 MNEST034290
Overlaps with miRBase pre-miRNAs: dre-mir-130a
HuntMi prediction: true miRNA