miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CATGCCTTGAGTGTAGGACCGT

selected species: Mus musculus

26 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGAC 	1
-------------------------------CATGCCTTGAGTGTAGGAC 	1
-------------------------------CATGCCTTGAGTGTAGGACCG 	27
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	31
-------------------------------CATGCCTTGAGTGTAGGACCGT 	763
-------------------------------CATGCCTTGAGTGTAGGACC 	30
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	16
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	12
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	7
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	283
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	118
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	4
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	7
----------------------------------------------------------------------TCCCACACCCAAGGCTTGC 	3

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	12
-------------------------------CATGCCTTGAGTGTAGGAC 	1
-------------------------------CATGCCTTGAGTGTAGGACCG 	4
-------------------------------CATGCCTTGAGTGTAGGACC 	12
-------------------------------CATGCCTTGAGTGTAGGACCGT 	201
--------------------------------ATGCCTTGAGTGTAGGACCGT 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	6
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	103
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	43

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539868	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	27
-------------------------------CATGCCTTGAGTGTAGGACCGT 	117
-------------------------------CATGCCTTGAGTGTAGGACCG 	3
-------------------------------CATGCCTTGAGTGTAGGACC 	4

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539877-5198	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	26
-------------------------------CATGCCTTGAGTGTAGGACCGT 	160
-------------------------------CATGCCTTGAGTGTAGGACCG 	5
-------------------------------CATGCCTTGAGTGTAGGACC 	10
-------------------------------CATGCCTTGAGTGTAGGAC 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539838	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	8
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	631
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1238
-------------------------------CATGCCTTGAGTGTAGGACCG 	76
-------------------------------CATGCCTTGAGTGTAGGACC 	3
-------------------------------CATGCCTTGAGTGTAGGAC 	13
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	9
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	478
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	108
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	25
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	6
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	3
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539850	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	10
------------------------------CCATGCCTTGAGTGTAGGACCG 	3
------------------------------CCATGCCTTGAGTGTAGGACCGT 	30
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	36
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	890
-------------------------------CATGCCTTGAGTGTAGGACCGT 	3861
-------------------------------CATGCCTTGAGTGTAGGACCG 	289
-------------------------------CATGCCTTGAGTGTAGGACC 	28
-------------------------------CATGCCTTGAGTGTAGGAC 	17
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	9
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------ATGCCTTGAGTGTAGGACC 	1
-----------------------------------------------------------------TACCCTCCCACACCCAAGGCTTG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	4
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	558
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	171
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	33
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	34
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539835	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
--------CTACAGATTTGCTTTTTCTCTTC 	1
------------------------------CCATGCCTTGAGTGTAGGACCGT 	19
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	4
------------------------------CCATGCCTTGAGTGTAGGACCG 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	1401
-------------------------------CATGCCTTGAGTGTAGGACCGT 	6178
-------------------------------CATGCCTTGAGTGTAGGACCG 	355
-------------------------------CATGCCTTGAGTGTAGGACC 	68
-------------------------------CATGCCTTGAGTGTAGGAC 	50
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	18
--------------------------------ATGCCTTGAGTGTAGGACCGT 	3
--------------------------------ATGCCTTGAGTGTAGGACCG 	1
---------------------------------TGCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	6
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	295
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	24
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	3
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	1
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM527276	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACC 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	34
-------------------------------CATGCCTTGAGTGTAGGAC 	1
-------------------------------CATGCCTTGAGTGTAGGACCG 	17
-------------------------------CATGCCTTGAGTGTAGGACC 	28
-------------------------------CATGCCTTGAGTGTAGGACCGT 	978
--------------------------------ATGCCTTGAGTGTAGGACCGT 	14
--------------------------------ATGCCTTGAGTGTAGGACC 	2
--------------------------------ATGCCTTGAGTGTAGGACCG 	1
---------------------------------TGCCTTGAGTGTAGGACCGT 	1
-------------------------------------------------------------------CCCTCCCACACCCAAGGCTTGC 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	13
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	289
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	7
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	117
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	4
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539869	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	7
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	208
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1524
-------------------------------CATGCCTTGAGTGTAGGACCG 	34
-------------------------------CATGCCTTGAGTGTAGGACC 	52
-------------------------------CATGCCTTGAGTGTAGGAC 	9
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	3
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	25
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	3
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539870	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	1
------------------------------CCATGCCTTGAGTGTAGGACCGT 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	195
-------------------------------CATGCCTTGAGTGTAGGACCGT 	785
-------------------------------CATGCCTTGAGTGTAGGACCG 	26
-------------------------------CATGCCTTGAGTGTAGGACC 	43
-------------------------------CATGCCTTGAGTGTAGGAC 	2
--------------------------------ATGCCTTGAGTGTAGGACCGT 	1
--------------------------------ATGCCTTGAGTGTAGGACC 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	12
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539849	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	18
------------------------------CCATGCCTTGAGTGTAGGACCG 	1
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	5
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	18
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	1121
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1905
-------------------------------CATGCCTTGAGTGTAGGACCG 	156
-------------------------------CATGCCTTGAGTGTAGGACC 	34
-------------------------------CATGCCTTGAGTGTAGGAC 	15
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	3
--------------------------------ATGCCTTGAGTGTAGGACCG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	59
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	19
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	3

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539848	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	17
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	5
------------------------------CCATGCCTTGAGTGTAGGACCG 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	554
-------------------------------CATGCCTTGAGTGTAGGACCGT 	4153
-------------------------------CATGCCTTGAGTGTAGGACCG 	119
-------------------------------CATGCCTTGAGTGTAGGACC 	139
-------------------------------CATGCCTTGAGTGTAGGAC 	16
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	4
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	5
--------------------------------ATGCCTTGAGTGTAGGACCGT 	5
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	351
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	40
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	46
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAGGA 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	5
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM539864	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	2
------------------------------CCATGCCTTGAGTGTAGGACCGT 	11
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	356
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1425
-------------------------------CATGCCTTGAGTGTAGGACCG 	114
-------------------------------CATGCCTTGAGTGTAGGAC 	8
-------------------------------CATGCCTTGAGTGTAGGACC 	7
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	7
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	151
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	46
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	10
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	13
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	1
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	1
----------------------------------------------------------------------TCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM539872	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	10
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	1
------------------------------CCATGCCTTGAGTGTAGGA 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	226
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1043
-------------------------------CATGCCTTGAGTGTAGGACCG 	33
-------------------------------CATGCCTTGAGTGTAGGACC 	48
-------------------------------CATGCCTTGAGTGTAGGAC 	2
--------------------------------ATGCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	18
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Mus musculus	GSM539861	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------AGATTTGCTTTTTCTCTTC 	1
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	2
------------------------------CCATGCCTTGAGTGTAGGACCG 	10
------------------------------CCATGCCTTGAGTGTAGGA 	1
------------------------------CCATGCCTTGAGTGTAGGACCGT 	24
------------------------------CCATGCCTTGAGTGTAGGACC 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	182
-------------------------------CATGCCTTGAGTGTAGGACCGT 	2126
-------------------------------CATGCCTTGAGTGTAGGACCG 	206
-------------------------------CATGCCTTGAGTGTAGGACC 	92
-------------------------------CATGCCTTGAGTGTAGGAC 	35
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	8
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	328
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	56
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	63
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	34
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	2
---------------------------------------------------------------------CTCCCACACCCAAGGCTTG 	1
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCAG 	1
----------------------------------------------------------------------TCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Mus musculus	GSM539847	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	16
-------------------------------CATGCCTTGAGTGTAGGACCGT 	136
-------------------------------CATGCCTTGAGTGTAGGACCG 	46
-------------------------------CATGCCTTGAGTGTAGGACC 	6
-------------------------------CATGCCTTGAGTGTAGGAC 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
--------------------------------ATGCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	22
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	8
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Mus musculus	GSM539853	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	14
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	8
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	407
-------------------------------CATGCCTTGAGTGTAGGACCGT 	2966
-------------------------------CATGCCTTGAGTGTAGGACCG 	84
-------------------------------CATGCCTTGAGTGTAGGACC 	140
-------------------------------CATGCCTTGAGTGTAGGAC 	16
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	12
--------------------------------ATGCCTTGAGTGTAGGACCGT 	2
--------------------------------ATGCCTTGAGTGTAGGACCGTT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	4
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	168
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	14
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	11
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Mus musculus	GSM539871	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	73
-------------------------------CATGCCTTGAGTGTAGGACCGT 	157
-------------------------------CATGCCTTGAGTGTAGGACCG 	5
-------------------------------CATGCCTTGAGTGTAGGACC 	10
-------------------------------CATGCCTTGAGTGTAGGAC 	3
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Mus musculus	GSM539878	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	2
------------------------------CCATGCCTTGAGTGTAGGACCGT 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	83
-------------------------------CATGCCTTGAGTGTAGGACCGT 	520
-------------------------------CATGCCTTGAGTGTAGGACCG 	12
-------------------------------CATGCCTTGAGTGTAGGACC 	25
-------------------------------CATGCCTTGAGTGTAGGAC 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	27
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	4
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	4

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Mus musculus	GSM539873	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCG 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	143
-------------------------------CATGCCTTGAGTGTAGGACCGT 	1323
-------------------------------CATGCCTTGAGTGTAGGACCG 	43
-------------------------------CATGCCTTGAGTGTAGGACC 	82
-------------------------------CATGCCTTGAGTGTAGGAC 	6
--------------------------------ATGCCTTGAGTGTAGGACCGT 	3
----------------------------------GCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	24
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	11
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	2
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGC 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Mus musculus	GSM539875	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	2
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	121
-------------------------------CATGCCTTGAGTGTAGGACCGT 	355
-------------------------------CATGCCTTGAGTGTAGGACCG 	23
-------------------------------CATGCCTTGAGTGTAGGACC 	3
-------------------------------CATGCCTTGAGTGTAGGAC 	4
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	27
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	3
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Mus musculus	GSM539857	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	129
-------------------------------CATGCCTTGAGTGTAGGACCGT 	474
-------------------------------CATGCCTTGAGTGTAGGACCG 	43
-------------------------------CATGCCTTGAGTGTAGGACC 	1
-------------------------------CATGCCTTGAGTGTAGGAC 	7
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	33
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	9
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	3
----------------------------------------------------------------------TCCCACACCCAAGGCTTGCA 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Mus musculus	GSM539867	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	2
------------------------------CCATGCCTTGAGTGTAGGACCGT 	17
------------------------------CCATGCCTTGAGTGTAGGACCG 	1
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	6
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	122
-------------------------------CATGCCTTGAGTGTAGGACCGT 	2059
-------------------------------CATGCCTTGAGTGTAGGACCG 	42
-------------------------------CATGCCTTGAGTGTAGGACC 	3
-------------------------------CATGCCTTGAGTGTAGGAC 	9
-------------------------------CATGCCTTGAGTGTAGGACCGTTGA 	2
--------------------------------ATGCCTTGAGTGTAGGACCGT 	2
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	105
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	14
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	1
---------------------------------------------------------------------CTCCCACACCCAAGGCTTGCA 	2

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Mus musculus	GSM539876	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	2
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	3
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	154
-------------------------------CATGCCTTGAGTGTAGGACCGT 	671
-------------------------------CATGCCTTGAGTGTAGGACCG 	26
-------------------------------CATGCCTTGAGTGTAGGACC 	3
-------------------------------CATGCCTTGAGTGTAGGAC 	4
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	34
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	1

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Mus musculus	GSM539854	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGT 	8
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	10
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	380
-------------------------------CATGCCTTGAGTGTAGGACCGT 	2220
-------------------------------CATGCCTTGAGTGTAGGACCG 	62
-------------------------------CATGCCTTGAGTGTAGGACC 	86
-------------------------------CATGCCTTGAGTGTAGGAC 	6
--------------------------------ATGCCTTGAGTGTAGGACCGT 	3
--------------------------------ATGCCTTGAGTGTAGGACC 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCAG 	5
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	173
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	24
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	3
--------------------------------------------------------------------CCTCCCACACCCAAGGCTT 	15

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
26	Mus musculus	GSM539874	CATGCCTTGAGTGTAGGACCGT	TACCCTCCCACACCCAAGGCTTGCA	up	5	3

Secondary structure

GAGCACGCCTACAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTCTTCTCTCTCCT
------------------------------CCATGCCTTGAGTGTAGGACCGTT 	1
------------------------------CCATGCCTTGAGTGTAGGACCGT 	8
-------------------------------CATGCCTTGAGTGTAGGACCGTTG 	4
-------------------------------CATGCCTTGAGTGTAGGACCGTT 	154
-------------------------------CATGCCTTGAGTGTAGGACCGT 	648
-------------------------------CATGCCTTGAGTGTAGGACCG 	25
-------------------------------CATGCCTTGAGTGTAGGACC 	4
-------------------------------CATGCCTTGAGTGTAGGAC 	4
--------------------------------ATGCCTTGAGTGTAGGACCGT 	1
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGCA 	45
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTGC 	11
--------------------------------------------------------------------CCTCCCACACCCAAGGCTTG 	3

Overlaps with: MNEST032199 MNEST032200
Overlaps with miRBase pre-miRNAs: mmu-mir-532
HuntMi prediction: true miRNA