miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CATGTTGACATCATCCAATATA

selected species: Vitis vinifera



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458929-2717 CATGTTGACATCATCCAATATA TATTTATTGATATTAATAAGTT down 5 0


Secondary structure

ATCAATAAGTTTAGTCTAGTTATATTTATTGATATTAATAAGTTACTTTTAACGGAATAGGAAAAACTAAGGTGATGTTTGTTTTTAGTTTTTTCTATTCAGATAAAAGTAACATGTTGACATCATCCAATATAATTAAACTGAACATATAAC
-------------------------------------------------------------------------------------------------------TAAAAGTAACATGTTGACATCATC 	1
----------------------------------------------------------------------------------------------------------------CATGTTGACATCATCCAATATA 	10
-----------------------------------------------------------------------------------------------------------------ATGTTGACATCATCCAATATA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 CATGTTGACATCATCCAATATA TGTTGGATGATGTCAATAAGTT up 1 0


Secondary structure

AGCGTAGTCTGTGGTGTTTGTTTTTTATTTTTTCTATTCAGCTAAAAGTAACATGTTGACATCATCCAATATAACTAAACTGAACCTATTGATAACAAGTTCATTTTAGCTATGTTGGATGATGTCAATAAGTTACTTTTAACTAAATAAAAAAAGCCAAAAAACAAACACCACTTTAAGTT
--------------------------------------CAGCTAAAAGTAACATGTTGACAT 	1
------------------------------------------TAAAAGTAACATGTTGACATCATC 	1
---------------------------------------------------CATGTTGACATCATCCAATATA 	10
----------------------------------------------------ATGTTGACATCATCCAATATA 	2
----------------------------------------------------------------------------------------------------TCATTTTAGCTATGTTGGATGATG 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAGTT 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAGT 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAG 	4
-------------------------------------------------------------------------------------------------------------------TGGATGATGTCAATAAGTTAC 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 CATGTTGACATCATCCAATATA TATTGGATGATATCAACAAGTT up 3 0


Secondary structure

GTTCTAATAAATATAAATTTAGGTGGTGTTTTTTTTTTGTCTGAATATAAAAGACTAAAATATTTGACTTTTTATATTTAGTTAAAAGTAACATGTTGACATCATCCAATATAACTAAACTCAACATATTAATAATAAGTTCACTTTAATCATATTGGATGATATCAACAAGTTACTTTTAACTGAATAAAAAATACTAAATATTTTGATTTTTTCTATTCAATCAAAAAACAAATACCACCTTAATTAACCATTTAAGATG
----------------------------------------------------------------------------------TAAAAGTAACATGTTGACATCATC 	1
-------------------------------------------------------------------------------------------CATGTTGACATCATCCAATATA 	10
--------------------------------------------------------------------------------------------ATGTTGACATCATCCAATATA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 CATGTTGACATCATCCAATATA TATTTATTGATATTAATAAGTT down 5 0


Secondary structure

ATCAATAAGTTTAGTCTAGTTATATTTATTGATATTAATAAGTTACTTTTAACGGAATAGGAAAAACTAAGGTGATGTTTGTTTTTAGTTTTTTCTATTCAGATAAAAGTAACATGTTGACATCATCCAATATAATTAAACTGAACATATAAC
----------------------------------------------------------------------------------------------------------AAGTAACATGTTGACATCATCCAA 	1
----------------------------------------------------------------------------------------------------------------CATGTTGACATCATCCAATATA 	5
----------------------------------------------------------------------------------------------------------------CATGTTGACATCATCCAAT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458928-2716 CATGTTGACATCATCCAATATA TGTTGGATGATGTCAATAAGTT up 1 0


Secondary structure

AGCGTAGTCTGTGGTGTTTGTTTTTTATTTTTTCTATTCAGCTAAAAGTAACATGTTGACATCATCCAATATAACTAAACTGAACCTATTGATAACAAGTTCATTTTAGCTATGTTGGATGATGTCAATAAGTTACTTTTAACTAAATAAAAAAAGCCAAAAAACAAACACCACTTTAAGTT
---------------------------------CTATTCAGCTAAAAGTAACAT 	1
---------------------------------------------AAGTAACATGTTGACATCATCCAA 	1
---------------------------------------------------CATGTTGACATCATCCAATATA 	5
---------------------------------------------------CATGTTGACATCATCCAAT 	1
------------------------------------------------------GTTGACATCATCCAATATAAC 	2
--------------------------------------------------------------------------------------------------------------TATGTTGGATGATGTCAATAA 	1
---------------------------------------------------------------------------------------------------------------ATGTTGGATGATGTCAATAAG 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAGTT 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAGT 	1
----------------------------------------------------------------------------------------------------------------TGTTGGATGATGTCAATAAG 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458928-2716 CATGTTGACATCATCCAATATA TATTGGATGATATCAACAAGTT up 3 0


Secondary structure

GTTCTAATAAATATAAATTTAGGTGGTGTTTTTTTTTTGTCTGAATATAAAAGACTAAAATATTTGACTTTTTATATTTAGTTAAAAGTAACATGTTGACATCATCCAATATAACTAAACTCAACATATTAATAATAAGTTCACTTTAATCATATTGGATGATATCAACAAGTTACTTTTAACTGAATAAAAAATACTAAATATTTTGATTTTTTCTATTCAATCAAAAAACAAATACCACCTTAATTAACCATTTAAGATG
-------------------------------------------------------------------------------------AAGTAACATGTTGACATCATCCAA 	1
-------------------------------------------------------------------------------------------CATGTTGACATCATCCAATATA 	5
-------------------------------------------------------------------------------------------CATGTTGACATCATCCAAT 	1
----------------------------------------------------------------------------------------------GTTGACATCATCCAATATAAC 	2


HuntMi prediction: true miRNA