miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CATTATTACTTTTGGTACGCG

selected species: Mus musculus



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539850 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCG 	7
-----------CATTATTACTTTTGGTACGC 	1
-----------CATTATTACTTTTGGTACG 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	1
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	2
------------------------------------------------TCGTACCGTGAGTAATAATGC 	1
-------------------------------------------------CGTACCGTGAGTAATAATGC 	1
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	4


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539835 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCGCT 	2
-----------CATTATTACTTTTGGTACGC 	3
-----------CATTATTACTTTTGGTACG 	1
-----------CATTATTACTTTTGGTACGCGC 	1
-----------CATTATTACTTTTGGTACGCG 	85
------------ATTATTACTTTTGGTACGCG 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	8
-----------------------------------------------CTCGTACCGTGAGTAATAATG 	2
-----------------------------------------------CTCGTACCGTGAGTAATAAT 	1
-----------------------------------------------CTCGTACCGTGAGTAATAA 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGCGC 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	5
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	25
------------------------------------------------TCGTACCGTGAGTAATAATGC 	11
------------------------------------------------TCGTACCGTGAGTAATAAT 	1
-------------------------------------------------CGTACCGTGAGTAATAATGCGC 	2
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	78
-------------------------------------------------CGTACCGTGAGTAATAATGC 	5
--------------------------------------------------GTACCGTGAGTAATAATGCG 	3


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539848 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCGCT 	1
-----------CATTATTACTTTTGGTACGCG 	120
-----------CATTATTACTTTTGGTACGC 	13
-----------------------------------------------CTCGTACCGTGAGTAATAAT 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	5
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	4
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	20
------------------------------------------------TCGTACCGTGAGTAATAATGC 	1
------------------------------------------------TCGTACCGTGAGTAATAAT 	1
------------------------------------------------TCGTACCGTGAGTAATAATG 	1
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	59
-------------------------------------------------CGTACCGTGAGTAATAATG 	1
-------------------------------------------------CGTACCGTGAGTAATAATGC 	15
--------------------------------------------------GTACCGTGAGTAATAATGC 	1
--------------------------------------------------GTACCGTGAGTAATAATGCG 	1


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539861 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCG 	6
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	1
-----------------------------------------------CTCGTACCGTGAGTAATAAT 	1
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	1
------------------------------------------------TCGTACCGTGAGTAATAATG 	1
-------------------------------------------------CGTACCGTGAGTAATAATGC 	1
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	3


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539875 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCGC 	2
-----------CATTATTACTTTTGGTACGCG 	96
-----------CATTATTACTTTTGGTACGC 	18
------------ATTATTACTTTTGGTACGCG 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	2
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	7
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	19
------------------------------------------------TCGTACCGTGAGTAATAATGC 	17
------------------------------------------------TCGTACCGTGAGTAATAATG 	8
------------------------------------------------TCGTACCGTGAGTAATAAT 	3
-------------------------------------------------CGTACCGTGAGTAATAATGCGC 	1
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	49
-------------------------------------------------CGTACCGTGAGTAATAATGC 	4
-------------------------------------------------CGTACCGTGAGTAATAATG 	1
--------------------------------------------------GTACCGTGAGTAATAATGCG 	1
--------------------------------------------------GTACCGTGAGTAATAATGC 	2
---------------------------------------------------TACCGTGAGTAATAATGCGCG 	1


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539876 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCGC 	1
-----------CATTATTACTTTTGGTACGCG 	241
-----------CATTATTACTTTTGGTACGC 	29
-----------CATTATTACTTTTGGTACG 	5
------------ATTATTACTTTTGGTACGCG 	1
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	3
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	9
-----------------------------------------------CTCGTACCGTGAGTAATAATG 	2
-----------------------------------------------CTCGTACCGTGAGTAATAAT 	1
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	49
------------------------------------------------TCGTACCGTGAGTAATAATGC 	37
------------------------------------------------TCGTACCGTGAGTAATAATG 	11
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	89
-------------------------------------------------CGTACCGTGAGTAATAATGC 	6
-------------------------------------------------CGTACCGTGAGTAATAATG 	4
--------------------------------------------------GTACCGTGAGTAATAATGC 	2
---------------------------------------------------TACCGTGAGTAATAATGCG 	1


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539874 CATTATTACTTTTGGTACGCG CGTACCGTGAGTAATAATGCG up 3 0


Secondary structure

CGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGC
-----------CATTATTACTTTTGGTACGCGC 	2
-----------CATTATTACTTTTGGTACGCG 	337
-----------CATTATTACTTTTGGTACGC 	45
-----------CATTATTACTTTTGGTACG 	9
------------ATTATTACTTTTGGTACGCG 	2
-----------------------------------------------CTCGTACCGTGAGTAATAATGCG 	5
-----------------------------------------------CTCGTACCGTGAGTAATAATGC 	13
-----------------------------------------------CTCGTACCGTGAGTAATAATG 	2
-----------------------------------------------CTCGTACCGTGAGTAATAAT 	4
------------------------------------------------TCGTACCGTGAGTAATAATGCG 	70
------------------------------------------------TCGTACCGTGAGTAATAATGC 	55
------------------------------------------------TCGTACCGTGAGTAATAATG 	23
------------------------------------------------TCGTACCGTGAGTAATAAT 	7
-------------------------------------------------CGTACCGTGAGTAATAATGCG 	151
-------------------------------------------------CGTACCGTGAGTAATAATGC 	24
-------------------------------------------------CGTACCGTGAGTAATAATG 	7
-------------------------------------------------CGTACCGTGAGTAATAATGCGCG 	1
--------------------------------------------------GTACCGTGAGTAATAATGCG 	1
--------------------------------------------------GTACCGTGAGTAATAATGC 	1
---------------------------------------------------TACCGTGAGTAATAATGCG 	1


Overlaps with: MNEST026692
Overlaps with miRBase pre-miRNAs: mmu-mir-126 cfa-mir-126
HuntMi prediction: true miRNA