miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CATTTAGCCAAAGCCTGACTGT

selected species: Mus musculus



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
------------AGTCAGGCTCCTGGCTAAAGTTCA 	1
----------------------------------------------GCATTTAGCCAAAGCCTGACTGT 	1
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	3
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	17
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	131
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTAA 	1
------------------------------------------------ATTTAGCCAAAGCCTGACTGT 	3

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	7
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	153
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	1
------------------------------------------------ATTTAGCCAAAGCCTGACTGT 	1

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTAA 	2
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	211
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	3
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	18
------------------------------------------------ATTTAGCCAAAGCCTGACTGT 	2

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539869 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
-----------------------------------------------CATTTAGCCAAAGCCTGAC 	1
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTAA 	1
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	47
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	116
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	4
-----------------------------------------------CATTTAGCCAAAGCCTGACT 	10

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527277-2110 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
----------------------------------------------GCATTTAGCCAAAGCCTGACTGT 	4
-----------------------------------------------CATTTAGCCAAAGCCTGACT 	2
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	11
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTAA 	1
-----------------------------------------------CATTTAGCCAAAGCCTGAC 	1
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	743
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	63
------------------------------------------------ATTTAGCCAAAGCCTGACTGT 	17
------------------------------------------------ATTTAGCCAAAGCCTGACTG 	1

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539867 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
----------------------------------------------GCATTTAGCCAAAGCCTGACTGT 	1
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	5
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	5

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM527279-2112 CATTTAGCCAAAGCCTGACTGT AGTCAGGCTCCTGGCTAAAGTTC down 4 1


Secondary structure

AGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTC
----------------------------------------------GCATTTAGCCAAAGCCTGACTGT 	2
-----------------------------------------------CATTTAGCCAAAGCCTGACT 	2
-----------------------------------------------CATTTAGCCAAAGCCTGACTGT 	336
-----------------------------------------------CATTTAGCCAAAGCCTGACTG 	5
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTA 	30
-----------------------------------------------CATTTAGCCAAAGCCTGACTGTAA 	3
------------------------------------------------ATTTAGCCAAAGCCTGACTGT 	5

Overlaps with: MNEST032016
Overlaps with miRBase pre-miRNAs: mmu-mir-344b
HuntMi prediction: true miRNA