miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CATTTTGATGGCTACCTCCC

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343285 CATTTTGATGGCTACCTCCC GAGTTTCCCATCAAAATACT down 5 0


Secondary structure

CTTCACAACGTGTAAGTCGCGGGAGTTTCCCATCAAAATACTTTTTATAATTTTAGCATTTTGATGGCTACCTCCCAAGGTTTAGGCACGTACTA
--------------------------------------------------------CATTTTGATGGCTACCTCCCAA 	5
--------------------------------------------------------CATTTTGATGGCTACCTCCCA 	10
--------------------------------------------------------CATTTTGATGGCTACCTCCC 	161
--------------------------------------------------------CATTTTGATGGCTACCTCC 	3

Overlaps with: MNEST025134
Overlaps with miRBase pre-miRNAs: cin-mir-4086
HuntMi prediction: true miRNA