miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCACTCTCTCCGTTTCCCTTCC

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 CCACTCTCTCCGTTTCCCTTCC AAGGGAAATGGAGAGAGTGTAT up 1 0


Secondary structure

ATGCAGCTTGCAGATTATCATCCACTCTCTCCGTTTCCCTTCCCACAGCTATCATCCGGACTAGCATTTCCTGTACATACTAGGGAAGGGAAATGGAGAGAGTGTATAATGAATTGCATGCTTGA
---------------------CCACTCTCTCCGTTTCCCTTCC 	18
---------------------CCACTCTCTCCGTTTCCCTTC 	13

Overlaps with: MNEST039578
Overlaps with miRBase pre-miRNAs: ppt-MIR1023d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 CCACTCTCTCCGTTTCCCTTCC AGGGAATCGGAAAGAGTGTAC up 3 1


Secondary structure

GCGTGTCTGGGATCGGTGTGTCGCGCAGTTACACAGCTTGCATTTCGGTGTCCACTCTCTCCGTTTCCCTTCCCATGATGGCTAGCCTTGAGTAAGTACATATGTTTTGAACACATGTATGCTTGCTTAAAATCCTTTGTCGGAGGGAATCGGAAAGAGTGTACAATGAATTGCAAGCTTGATTGATTCGATTCTGGTTTACATCAGTACCT
---------------------------------------------------CCACTCTCTCCGTTTCCCTTCC 	18
---------------------------------------------------CCACTCTCTCCGTTTCCCTTC 	13
-----------------------------------------------------------------------------------------------------------------------------------------------AGGGAATCGGAAAGAGTGTAC 	9
-----------------------------------------------------------------------------------------------------------------------------------------------AGGGAATCGGAAAGAGTGTA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------GGAATCGGAAAGAGTGTAC 	1

Overlaps with: MNEST039576 MNEST039577
Overlaps with miRBase pre-miRNAs: ppt-MIR1023c
HuntMi prediction: true miRNA