miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCAGGACCATCAGTGTGACTAT

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539850 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
---------------------CAGTCATGGTGTTCGGTCTTA 	8
---------------------CAGTCATGGTGTTCGGTCTTAGTT 	1
---------------------CAGTCATGGTGTTCGGTCTTAG 	2
----------------------AGTCATGGTGTTCGGTCTTAGTTT 	1
----------------------AGTCATGGTGTTCGGTCTTAGTT 	1
----------------------AGTCATGGTGTTCGGTCTTA 	5
----------------------------------------------------------------CCAGGACCATCAGTGTGACT 	3
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	4
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	17
----------------------------------------------------------------CCAGGACCATCAGTGTGACTA 	2
----------------------------------------------------------------CCAGGACCATCAGTGTGAC 	1
-----------------------------------------------------------------CAGGACCATCAGTGTGACTATT 	1

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539835 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
---------------------CAGTCATGGTGTTCGGTCTTAGT 	2
---------------------CAGTCATGGTGTTCGGTCTTA 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	5
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	5
-----------------------------------------------------------------CAGGACCATCAGTGTGACTAT 	1

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539855 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
---------------------CAGTCATGGTGTTCGGTCTTAGTT 	1
----------------------AGTCATGGTGTTCGGTCTTAGTTT 	1
----------------------AGTCATGGTGTTCGGTCTTAGT 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	5
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	11

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539848 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
----------------------AGTCATGGTGTTCGGTCTTAG 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	9

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539853 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
----------------------AGTCATGGTGTTCGGTCTTA 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	2
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	6

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539854 CCAGGACCATCAGTGTGACTAT AGTCATGGTGTTCGGTCTTAGTT down 6 1


Secondary structure

AGCATATCTGTCCTGATCCCACAGTCATGGTGTTCGGTCTTAGTTTGTGACCAGTTTAGTTTAACCAGGACCATCAGTGTGACTATTGGATTGGGACTATCCACT
----------------------------------------------------------------CCAGGACCATCAGTGTGACTATT 	1
----------------------------------------------------------------CCAGGACCATCAGTGTGACTAT 	5
----------------------------------------------------------------CCAGGACCATCAGTGTGACTA 	1
-----------------------------------------------------------------CAGGACCATCAGTGTGACTATT 	1

Overlaps with: MNEST032437 MNEST032438
Overlaps with miRBase pre-miRNAs: mmu-mir-1933
HuntMi prediction: true miRNA