miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCAGTCTTGCATTTATTCCACT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant CCAGTCTTGCATTTATTCCACT GGGGATAATTGTAGGACTTACT down 4 0


Secondary structure

TTCAAAATTACTGTCGTCATGGGGGGATAATTGTAGGACTTACTGTGAATTTGTAATACAGCCAGTCTTGCATTTATTCCACTTTGACTGCAGAAAAATGTG
--CAAAATTACTGTCGTCATGG 	2
----------------------GGGGATAATTGTAGGACTTACT 	15
-------------------------------------------------------------CCAGTCTTGCATTTATTCCACTT 	4
-------------------------------------------------------------CCAGTCTTGCATTTATTCCACT 	79
-------------------------------------------------------------CCAGTCTTGCATTTATTCCAC 	8
-------------------------------------------------------------CCAGTCTTGCATTTATTCCA 	14
-------------------------------------------------------------CCAGTCTTGCATTTATTCC 	1
--------------------------------------------------------------CAGTCTTGCATTTATTCCACT 	1

Overlaps with: MNEST035121
Overlaps with miRBase pre-miRNAs: api-mir-3027
HuntMi prediction: true miRNA