miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CCAGTGCTGTTAGAAGAGGGCT

selected species: Mus musculus



14 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539838 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	27
---------------------CCAGTGCTGTTAGAAGAGGG 	3

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539850 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
--------------------GCCAGTGCTGTTAGAAGAGGGCT 	2
--------------------GCCAGTGCTGTTAGAAGAGGG 	1
---------------------CCAGTGCTGTTAGAAGAGGGCT 	35
---------------------CCAGTGCTGTTAGAAGAGGGC 	5
---------------------CCAGTGCTGTTAGAAGAGGG 	8
---------------------CCAGTGCTGTTAGAAGAGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539835 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
-------------------AGCCAGTGCTGTTAGAAGAGGG 	1
---------------------CCAGTGCTGTTAGAAGAGGGCT 	38
---------------------CCAGTGCTGTTAGAAGAGGGCTGA 	1
---------------------CCAGTGCTGTTAGAAGAGGGC 	2
---------------------CCAGTGCTGTTAGAAGAGGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539848 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	17
---------------------CCAGTGCTGTTAGAAGAGGG 	3
---------------------CCAGTGCTGTTAGAAGAGGGC 	2
---------------------CCAGTGCTGTTAGAAGAGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539864 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	23
---------------------CCAGTGCTGTTAGAAGAGGG 	4
---------------------CCAGTGCTGTTAGAAGAGGGC 	2
---------------------CCAGTGCTGTTAGAAGAGG 	2

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539872 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	6
---------------------CCAGTGCTGTTAGAAGAGGGCTG 	1
---------------------CCAGTGCTGTTAGAAGAGGGC 	2

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539861 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
--------------------GCCAGTGCTGTTAGAAGAGGG 	3
--------------------GCCAGTGCTGTTAGAAGAG 	1
---------------------CCAGTGCTGTTAGAAGAGGGCT 	25
---------------------CCAGTGCTGTTAGAAGAGGG 	7
---------------------CCAGTGCTGTTAGAAGAGGGC 	3
---------------------CCAGTGCTGTTAGAAGAGG 	6
----------------------CAGTGCTGTTAGAAGAGGGCT 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539853 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	9
---------------------CCAGTGCTGTTAGAAGAGGGC 	2
---------------------CCAGTGCTGTTAGAAGAGGGCTG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Mus musculus GSM539871 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	5
---------------------CCAGTGCTGTTAGAAGAGGG 	2
---------------------CCAGTGCTGTTAGAAGAGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Mus musculus GSM539873 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	5
---------------------CCAGTGCTGTTAGAAGAGGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Mus musculus GSM539875 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	7
---------------------CCAGTGCTGTTAGAAGAGGGC 	1
---------------------CCAGTGCTGTTAGAAGAGGG 	3
---------------------CCAGTGCTGTTAGAAGAGG 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Mus musculus GSM539857 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	24
---------------------CCAGTGCTGTTAGAAGAGGGC 	2
---------------------CCAGTGCTGTTAGAAGAGGG 	7
---------------------CCAGTGCTGTTAGAAGAGG 	3

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Mus musculus GSM539867 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	14
---------------------CCAGTGCTGTTAGAAGAGGG 	3

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Mus musculus GSM539876 CCAGTGCTGTTAGAAGAGGGCT CTCTCTTCTGCAGCACTGACT up 1 1


Secondary structure

CCAAGGTCACAGAGTGAGCAGCCAGTGCTGTTAGAAGAGGGCTGAGAGCAGGGAGAGCTCTCTTCTGCAGCACTGACTTTTCCTCTGCATTGGCAC
---------------------CCAGTGCTGTTAGAAGAGGGCT 	10
---------------------CCAGTGCTGTTAGAAGAGGGC 	4
---------------------CCAGTGCTGTTAGAAGAGGG 	1
---------------------CCAGTGCTGTTAGAAGAGG 	1
------------------------GTGCTGTTAGAAGAGGGCTGA 	1

Overlaps with: MNEST032464
Overlaps with miRBase pre-miRNAs: mmu-mir-1960
HuntMi prediction: true miRNA