miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CCCAAACTCGAAGGAGTTTCA

selected species: Drosophila melanogaster

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
--------------------ACCCAAACTCGAAGGAGTTTCA 	1
---------------------CCCAAACTCGAAGGAGTTTC 	7
---------------------CCCAAACTCGAAGGAGTTT 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	142
----------------------CCAAACTCGAAGGAGTTTCA 	1
---------------------------------------------------------------------------------------------------------GCATTTCTTGCAGTTCGAA 	1

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
------------------ATGCCCAAACTCGAAGGAGTTTCA 	1
-------------------TGCCCAAACTCGAAGGAGTTTC 	1
--------------------GCCCAAACTCGAAGGAGTTTCA 	1
---------------------CCCAAACTCGAAGGAGTTTC 	7
---------------------CCCAAACTCGAAGGAGTTT 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	142
----------------------CCAAACTCGAAGGAGTTTCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATTCGATTTTGATCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------AACTCATTCGATTTTGATCAT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTCGATTTTGATCATA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTCGATTTTGATCATAC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCGATTTTGATCATACTA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399105-16286	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
--------------------ACCCAAACTCGAAGGAGTTTCA 	2
--------------------ACCCAAACTCGAAGGAGTTTC 	1
---------------------CCCAAACTCGAAGGAGTTTC 	1
---------------------CCCAAACTCGAAGGAGTTTCAC 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	179
-----------------------------------------------------------------------------------------------------------------------------------------------TTGATTTTTGAAATGTGAAGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTCATTCGATTTTGAATA 	7

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
----------------GTATGCCCAAACTCGAAGGAG 	1
-----------------TATGCCCAAACTCGAAGGAGT 	2
------------------ATGCCCAAACTCGAAGGAGTTTCA 	1
-------------------TGCCCAAACTCGAAGGAGTTT 	2
-------------------TGCCCAAACTCGAAGGAGTTTC 	1
---------------------CCCAAACTCGAAGGAGTTTC 	1
---------------------CCCAAACTCGAAGGAGTTTCAC 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	179
----------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCATTCGATTTTGATCA 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTCGATTTTGATCATAC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
---------------------CCCAAACTCGAAGGAGTTTCA 	11

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360262-14327	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
------------------ATGCCCAAACTCGAAGGAGTT 	3
--------------------GCCCAAACTCGAAGGAGTTTCA 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	11
---------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCGATTTTGATCATACTA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM322543-14323	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
--------------------ACCCAAACTCGAAGGAGTTTC 	3
---------------------CCCAAACTCGAAGGAGTTT 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	13

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM322543-14323	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
---------------------CCCAAACTCGAAGGAGTTT 	1
---------------------CCCAAACTCGAAGGAGTTTCA 	13

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM286604-9792	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
---------------------CCCAAACTCGAAGGAGTTTCA 	31
----------------------CCAAACTCGAAGGAGTTTCAC 	1

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286604-9792	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
---------------------CCCAAACTCGAAGGAGTTTCA 	31
----------------------CCAAACTCGAAGGAGTTTCAC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM322208-14317	CCCAAACTCGAAGGAGTTTCA	AAGCTCATTCGATTTTGAATA	up	4	0

Secondary structure

TCCTATAATGTTGTTCATATACCCAAACTCGAAGGAGTTTCACATTAAGAAGAGCAGCAGACGCGGAATAATTTGTTCGAGCCCCTTGAAATTCATTTTACAAATGCATTTCTTGCAGTTCGAAAATCTTTCTCTGCCAGGTGTTGATTTTTGAAATGTGAAGCTCATTCGATTTTGAATATATGAGCAACA
---------------------CCCAAACTCGAAGGAGTTTCA 	6

Overlaps with: MNEST006578
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM322208-14317	CCCAAACTCGAAGGAGTTTCA	AAACTCATTCGATTTTGATCA	up	4	0

Secondary structure

TCTTTCAATGAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTCCTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGATGCATTTTCCGTCTCTGAAAACGTCTTCAGCAGAAGTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGACATTGGAT
---------------------CCCAAACTCGAAGGAGTTTCA 	6

HuntMi prediction: true miRNA