miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CCGACTTCTGGGCTCCGGCTTT

selected species: Mus musculus

16 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539868	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	11
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	1
--------------------------------------------------------------CGACTTCTGGGCTCCGGCTTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539838	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	14
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	2
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	4
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTTG 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	280
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	9
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	26
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	3

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539835	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
-----------------------------------------------------------CACCGACTTCTGGGCTCCGGCTTT 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	12
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	6
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTTG 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	150
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	5
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	15
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539870	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	40
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	4

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539848	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	28
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	3

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539864	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	2
----------------------AGCTGGAGCACAAAAGCCG 	10
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	7
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	2
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTTG 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	286
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	36
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	9
--------------------------------------------------------------CGACTTCTGGGCTCCGGCT 	1
--------------------------------------------------------------CGACTTCTGGGCTCCGGCTTT 	1
---------------------------------------------------------------GACTTCTGGGCTCCGGCTTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539872	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	3
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	54
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	3

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539861	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCG 	5
-----------------------GCTGGAGCACAAAAGCCGGTGC 	1
-----------------------------------------------------------CACCGACTTCTGGGCTCCGGCTTT 	1
-----------------------------------------------------------CACCGACTTCTGGGCTCCGGCT 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	10
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	12
------------------------------------------------------------ACCGACTTCTGGGCTCCGGC 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	8
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	187
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	46
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	100
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	7
--------------------------------------------------------------CGACTTCTGGGCTCCGGCTTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539853	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	3
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	3
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	34
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	5

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539871	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	8

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539878	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
------------------------------------------------------------ACCGACTTCTGGGCTCCGGC 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	6
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539875	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	2
----------------------AGCTGGAGCACAAAAGCCG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	71
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	11
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	3
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	2

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM539857	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	8
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTT 	3
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCT 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTTG 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	315
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	67
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	24
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	6
--------------------------------------------------------------CGACTTCTGGGCTCCGGCTTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM539876	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	64
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	11
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	5
-------------------------------------------------------------CCGACTTCTGGGCTCCGGC 	1
--------------------------------------------------------------CGACTTCTGGGCTCCGGCTT 	1

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Mus musculus	GSM539854	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	1
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	12
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	3

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Mus musculus	GSM539874	CCGACTTCTGGGCTCCGGCTTT	AGCTGGAGCACAAAAGCCGGTG	down	3	0

Secondary structure

AACATCTTAACCTTTCTTGCGAAGCTGGAGCACAAAAGCCGGTGCCGGTGTGATGCCTACACCGACTTCTGGGCTCCGGCTTTGGAAGGAAGGAGGTAGCCT
----------------------AGCTGGAGCACAAAAGCCGGTG 	1
----------------------AGCTGGAGCACAAAAGCCG 	3
------------------------------------------------------------ACCGACTTCTGGGCTCCGGCTTT 	2
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTTT 	71
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCTT 	9
-------------------------------------------------------------CCGACTTCTGGGCTCCGGCT 	5

Overlaps with: MNEST032468 MNEST032469
Overlaps with miRBase pre-miRNAs: mmu-mir-1964
HuntMi prediction: true miRNA