miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCGTCAAAGCGGGCTGTCGTA

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant CCGTCAAAGCGGGCTGTCGTA TCACAGCCAGCTTTGATGAGCA up 2 1


Secondary structure

TGCTTTGGAGTCGATCTGTTGCCGTCAAAGCGGGCTGTCGTAGAGTGTTCATTTTCTTTGACTATCACAGCCAGCTTTGATGAGCACCGGATCGATATTGGTCA
----------------TGTTGCCGTCAAAGCGGGCTGT 	1
---------------------CCGTCAAAGCGGGCTGTCGTAGAG 	2
---------------------CCGTCAAAGCGGGCTGTCGTAGA 	15
---------------------CCGTCAAAGCGGGCTGTCGTAG 	69
---------------------CCGTCAAAGCGGGCTGTCGTA 	1316
---------------------CCGTCAAAGCGGGCTGTCGT 	172
---------------------CCGTCAAAGCGGGCTGTCG 	13
---------------------CCGTCAAAGCGGGCTGTCGTAGAGT 	1
----------------------CGTCAAAGCGGGCTGTCGTA 	29
----------------------CGTCAAAGCGGGCTGTCGTAGA 	1
----------------------CGTCAAAGCGGGCTGTCGTAG 	1
----------------------CGTCAAAGCGGGCTGTCGT 	1
-----------------------GTCAAAGCGGGCTGTCGTAG 	1
--------------------------------------------------------------TATCACAGCCAGCTTTGATGAG 	60
--------------------------------------------------------------TATCACAGCCAGCTTTGATGA 	209
--------------------------------------------------------------TATCACAGCCAGCTTTGATGAGCA 	11
--------------------------------------------------------------TATCACAGCCAGCTTTGATGAGC 	45
--------------------------------------------------------------TATCACAGCCAGCTTTGATG 	50
--------------------------------------------------------------TATCACAGCCAGCTTTGAT 	1
---------------------------------------------------------------ATCACAGCCAGCTTTGATGAGCA 	1
----------------------------------------------------------------TCACAGCCAGCTTTGATGAGCA 	1018
----------------------------------------------------------------TCACAGCCAGCTTTGATGAGC 	65
----------------------------------------------------------------TCACAGCCAGCTTTGATGAG 	26
----------------------------------------------------------------TCACAGCCAGCTTTGATGA 	8
----------------------------------------------------------------TCACAGCCAGCTTTGATGAGCAC 	1
-----------------------------------------------------------------CACAGCCAGCTTTGATGAGCA 	1
------------------------------------------------------------------ACAGCCAGCTTTGATGAGCA 	14
------------------------------------------------------------------ACAGCCAGCTTTGATGAGC 	3

Overlaps with: MNEST035045
Overlaps with miRBase pre-miRNAs: api-mir-2c
HuntMi prediction: true miRNA