miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCGTCCTAAGGTTGTTGAGTT

selected species: Sus scrofa



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 CCGTCCTAAGGTTGTTGAGTT CTCTTCAATCTCAGGACTCGCA down 4 1


Secondary structure

AGTTCCTGACCTGAACGCGTGACTCTTCAATCTCAGGACTCGCATAATTAGCAGAATGCCGTCCTAAGGTTGTTGAGTTCTGCGTTTCTGGGCATTTC
----------------------CTCTTCAATCTCAGGACTCGCA 	1
-----------------------TCTTCAATCTCAGGACTCGC 	1
--------------------------------------------------------TGCCGTCCTAAGGTTGTTGAGT 	1
----------------------------------------------------------CCGTCCTAAGGTTGTTGAGTT 	7
----------------------------------------------------------CCGTCCTAAGGTTGTTGAGT 	6
----------------------------------------------------------CCGTCCTAAGGTTGTTGAGTTC 	1

Overlaps with: MNEST034129 MNEST034130
Overlaps with miRBase pre-miRNAs: ssc-mir-676-2 ssc-mir-676-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636848 CCGTCCTAAGGTTGTTGAGTT CTCTTCAATCTCAGGACTCGCA down 4 1


Secondary structure

AGTTCCTGACCTGAACGCGTGACTCTTCAATCTCAGGACTCGCATAATTAGCAGAATGCCGTCCTAAGGTTGTTGAGTTCTGCGTTTCTGGGCATTTC
---TCCTGACCTGAACGCGTGA 	1
----------------------CTCTTCAATCTCAGGACTCGCA 	1
----------------------CTCTTCAATCTCAGGACTCGC 	1
----------------------------------------------------------CCGTCCTAAGGTTGTTGAGTT 	51
----------------------------------------------------------CCGTCCTAAGGTTGTTGAGT 	14
----------------------------------------------------------CCGTCCTAAGGTTGTTGAG 	2

Overlaps with: MNEST034129 MNEST034130
Overlaps with miRBase pre-miRNAs: ssc-mir-676-2 ssc-mir-676-1
HuntMi prediction: true miRNA