miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CCTGCATTGTACACACTGTGCG

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 CCTGCATTGTACACACTGTGCG CACAGCGCATACAATGTGGATG up 5 0


Secondary structure

CATTTTCAGATATGCTGTGGACTCCTCGGCTCCTGCATTGTACACACTGTGCGGAAAACATGGACATGCACAGCGCATACAATGTGGATGCTGTGGAGCCCAGACACTTCTGTTGCAG
-------------------------------CCTGCATTGTACACACTGTGC 	3
-------------------------------CCTGCATTGTACACACTGTGCG 	19
--------------------------------------------------------------------CACAGCGCATACAATGTGGATG 	7
--------------------------------------------------------------------CACAGCGCATACAATGTGGA 	1

Overlaps with: MNEST034483 MNEST034484
Overlaps with miRBase pre-miRNAs: dre-mir-460
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 CCTGCATTGTACACACTGTGCG CACAGCGCATACAATGTGGATG up 5 0


Secondary structure

CATTTTCAGATATGCTGTGGACTCCTCGGCTCCTGCATTGTACACACTGTGCGGAAAACATGGACATGCACAGCGCATACAATGTGGATGCTGTGGAGCCCAGACACTTCTGTTGCAG
-------------------------------CCTGCATTGTACACACTGTGCG 	5
--------------------------------------------------------------------CACAGCGCATACAATGTGGATG 	2
--------------------------------------------------------------------CACAGCGCATACAATGTGGATGC 	1

Overlaps with: MNEST034483 MNEST034484
Overlaps with miRBase pre-miRNAs: dre-mir-460
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 CCTGCATTGTACACACTGTGCG CACAGCGCATACAATGTGGATG up 5 0


Secondary structure

CATTTTCAGATATGCTGTGGACTCCTCGGCTCCTGCATTGTACACACTGTGCGGAAAACATGGACATGCACAGCGCATACAATGTGGATGCTGTGGAGCCCAGACACTTCTGTTGCAG
-------------------------------CCTGCATTGTACACACTGTGCG 	190
-------------------------------CCTGCATTGTACACACTGTGC 	16
--------------------------------CTGCATTGTACACACTGTGCG 	1
--------------------------------------------------------------------CACAGCGCATACAATGTGGATG 	31
---------------------------------------------------------------------ACAGCGCATACAATGTGGATG 	1

Overlaps with: MNEST034483 MNEST034484
Overlaps with miRBase pre-miRNAs: dre-mir-460
HuntMi prediction: true miRNA