miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CGAAGAGAGAGAGCACAGCCC

selected species: Physcomitrella patens

27 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	116
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	2
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
-------------------------------CGAAGAGAGAGAGCACAGC 	3
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------------------------------------------------------------------------------GGGCTGTGCTCTCTCTTTTC 	2
---------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCCAG 	1
---------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCCA 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	31
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	2
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	5
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	18
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	2

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM115097	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-------------------------------CGAAGAGAGAGAGCACAGCCC 	116
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
-------------------------------CGAAGAGAGAGAGCACAGC 	3
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------------------------------------------------------------------------------GCTGTTCTCTCTCTCTTCTAG 	2

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM115097	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	116
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
-------------------------------CGAAGAGAGAGAGCACAGC 	3
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
-----------------------------------------------------------------------------------------------------CGGGCTGTGCTCTCTCTTTTCCAG 	1
------------------------------------------------------------------------------------------------------GGGCTGTGCTCTCTCTTTTC 	2
-------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCCAG 	1
-------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCCA 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	31
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	2
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	5
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	18
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	2

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM313212	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	120
-------------------------------CGAAGAGAGAGAGCACAGC 	2
-------------------------------CGAAGAGAGAGAGCACAGCC 	20
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	4
--------------------------------GAAGAGAGAGAGCACAGCCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	2
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	21
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	3
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	8
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	12
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	3
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	4
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGTC 	1
-----------------------------------------------------------------------------------------------------------------TCTCTCTTTTCCAGTCCCTAC 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM313212	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-------------------------------CGAAGAGAGAGAGCACAGCCC 	120
-------------------------------CGAAGAGAGAGAGCACAGC 	2
-------------------------------CGAAGAGAGAGAGCACAGCC 	20
-------------------------------CGAAGAGAGAGAGCACAGCCCT 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	2

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM313212	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	120
-------------------------------CGAAGAGAGAGAGCACAGC 	2
-------------------------------CGAAGAGAGAGAGCACAGCC 	20
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	2
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	21
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	3
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	8
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	12
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	3
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	4
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGTC 	1
---------------------------------------------------------------------------------------------------------------TCTCTCTTTTCCAGTCCCTAC 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM115095	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	15
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	4
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	2
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	6
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Physcomitrella patens	GSM115095	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-------------------------------CGAAGAGAGAGAGCACAGCCC 	15
-------------------------------CGAAGAGAGAGAGCACAGCC 	4
---------------------------------------------------------------------------------------------------------CTGTTCTCTCTCTCTTCTAG 	1

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Physcomitrella patens	GSM115095	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	15
-------------------------------CGAAGAGAGAGAGCACAGCC 	4
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	2
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	6
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Physcomitrella patens	GSM313213	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	149
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
--------------------------------GAAGAGAGAGAGCACAGCCC 	2
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	17
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	3
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	7
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	13
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	3
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	3
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	3
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Physcomitrella patens	GSM313213	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-------------------------------CGAAGAGAGAGAGCACAGCCC 	149
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
--------------------------------GAAGAGAGAGAGCACAGCCC 	2

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Physcomitrella patens	GSM313213	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	149
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCC 	17
--------------------------------GAAGAGAGAGAGCACAGCCC 	2
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	17
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	3
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	7
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	13
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	3
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	3
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	3
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Physcomitrella patens	GSM313215	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
------------------------CAGGATTCGAAGAGAGAGAGC 	1
----------------------------ATTCGAAGAGAGAGAGCACAG 	4
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	754
-------------------------------CGAAGAGAGAGAGCACAGC 	7
-------------------------------CGAAGAGAGAGAGCACAGCC 	96
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	3
--------------------------------GAAGAGAGAGAGCACAGCC 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	12
-------------------------------------------------------------------------------------CCATTGGGAATTTGATGTTGGG 	1
--------------------------------------------------------------------------------------CATTGGGAATTTGATGTTGG 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	106
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	96
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	21
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	1
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	22
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	4
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	6
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	3

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Physcomitrella patens	GSM313215	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	754
-------------------------------CGAAGAGAGAGAGCACAGC 	7
-------------------------------CGAAGAGAGAGAGCACAGCC 	96
-------------------------------CGAAGAGAGAGAGCACAGCCCT 	2
--------------------------------GAAGAGAGAGAGCACAGCC 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	12
--------------------------------------------------------------------------------------------------------GCTGTTCTCTCTCTCTTCTAG 	2
---------------------------------------------------------------------------------------------------------CTGTTCTCTCTCTCTTCTAGA 	1

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Physcomitrella patens	GSM313215	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
----------------------------ATTCGAAGAGAGAGAGCACAG 	4
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	754
-------------------------------CGAAGAGAGAGAGCACAGC 	7
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	3
-------------------------------CGAAGAGAGAGAGCACAGCC 	96
--------------------------------GAAGAGAGAGAGCACAGCC 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	12
------------------------------------------------------------------------------------------------GATGTCGGGCTGTGCTCTCTC 	1
-------------------------------------------------------------------------------------------------ATGTCGGGCTGTGCTCTCTCT 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	106
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	96
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	21
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	1
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	22
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	4
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	6
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	3

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Physcomitrella patens	GSM115096	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	61
-------------------------------CGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	9
---------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCC 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	4
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	6
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	12
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	15
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	2
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	2
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Physcomitrella patens	GSM115096	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-------------------------------CGAAGAGAGAGAGCACAGCCC 	61
-------------------------------CGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	9

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Physcomitrella patens	GSM115096	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-------------------------------CGAAGAGAGAGAGCACAGCCC 	61
-------------------------------CGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	9
-------------------------------------------------------------------------------------------------------GGCTGTGCTCTCTCTTTTCC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	4
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	6
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	12
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	15
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	2
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	2
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Physcomitrella patens	GSM313216	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
------------------------CAGGATTCGAAGAGAGAGAG 	1
-----------------------------TTCGAAGAGAGAGAGCACA 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	103
-------------------------------CGAAGAGAGAGAGCACAGC 	6
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	14
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
----------------------------------------------------------------------------------GATCCATTGGGAATTTGATGTTGG 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	35
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	13
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	10
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	1
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	2
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	1
-------------------------------------------------------------------------------------------------------------GTGCTCTCTCTTTTCCAGTCC 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Physcomitrella patens	GSM313216	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-----------------------------TTCGAAGAGAGAGAGCACA 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	103
-------------------------------CGAAGAGAGAGAGCACAGC 	6
-------------------------------CGAAGAGAGAGAGCACAGCC 	14
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
---------------------------------AAGAGAGAGAGCACAGCCCTG 	1

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Physcomitrella patens	GSM313216	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-----------------------------TTCGAAGAGAGAGAGCACA 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	103
-------------------------------CGAAGAGAGAGAGCACAGC 	6
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	1
-------------------------------CGAAGAGAGAGAGCACAGCC 	14
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	35
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	13
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	10
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	1
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	2
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	1
-----------------------------------------------------------------------------------------------------------GTGCTCTCTCTTTTCCAGTCC 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Physcomitrella patens	GSM313214	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
------------------------CAGGATTCGAAGAGAGAGAGC 	1
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	339
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCC 	44
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	3
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	5
-------------------------------------------------------------------------------------------------------TGGGCTGTGCTCTCTCTTTTCCA 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	73
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	2
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	57
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	34
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	9
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	12
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	5
-------------------------------------------------------------------------------------------------------------GTGCTCTCTCTTTTCCAGTCC 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Physcomitrella patens	GSM313214	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	339
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCC 	44
-------------------------------CGAAGAGAGAGAGCACAGCCCT 	2
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	5
--------------------------------------------------------------------------------------------------------GCTGTTCTCTCTCTCTTCTAG 	5
----------------------------------------------------------------------------------------------------------TGTTCTCTCTCTCTTCTAGA 	1

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Physcomitrella patens	GSM313214	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	339
-------------------------------CGAAGAGAGAGAGCACAGC 	5
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	4
-------------------------------CGAAGAGAGAGAGCACAGCC 	44
--------------------------------GAAGAGAGAGAGCACAGCC 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	5
----------------------------------AGAGAGAGAGCACAGCCCGTA 	1
------------------------------------------------------------------------------------------------GATGTCGGGCTGTGCTCTCTC 	2
-------------------------------------------------------------------------------------------------ATGTCGGGCTGTGCTCTCTC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	73
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	2
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	57
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	34
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	9
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	12
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	5
-----------------------------------------------------------------------------------------------------------GTGCTCTCTCTTTTCCAGTCC 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Physcomitrella patens	GSM313217	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

ATTTCAGCTTTACTACATCCAAGCCAGGATTCGAAGAGAGAGAGCACAGCCCCGTTACTTTTGCTGAAAGAATACTTCCTGTGATCCATTGGGAATTTGATGTTGGGCTGTGCTCTCTCTTTTCCAGTCCCTACCTGGATGTGCTGCCATTGCGG
------------------------CAGGATTCGAAGAGAGAGAGC 	2
----------------------------ATTCGAAGAGAGAGAGCACAG 	1
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
------------------------------TCGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	90
-------------------------------CGAAGAGAGAGAGCACAGCC 	6
-------------------------------CGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCCCC 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	31
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	1
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	18
----------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	8
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	5
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	1
-----------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1
------------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	1

Overlaps with: MNEST039505 MNEST051408
Overlaps with miRBase pre-miRNAs: ppt-MIR529c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
26	Physcomitrella patens	GSM313217	CGAAGAGAGAGAGCACAGCCC	GCTGTTCTCTCTCTCTTCTAG	up	2	0

Secondary structure

AACTCCCCTTTTCTACATTCAAGCCGGGTTTCGAAGAGAGAGAGCACAGCCCTGGACTTTTCTCATGTGACCGATTTTAGCGGTACATGGTGCACTGTCATCGGGCTGTTCTCTCTCTCTTCTAGACCCTACTTGGATGTGTTTCTACTGCGA
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
------------------------------TCGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	90
-------------------------------CGAAGAGAGAGAGCACAGCC 	6
-------------------------------CGAAGAGAGAGAGCACAGC 	1
--------------------------------GAAGAGAGAGAGCACAGCCC 	1

Overlaps with: MNEST039503 MNEST051406
Overlaps with miRBase pre-miRNAs: ppt-MIR529a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
27	Physcomitrella patens	GSM313217	CGAAGAGAGAGAGCACAGCCC	GCTGTGCTCTCTCTTTTCCAG	up	1	0

Secondary structure

AATTCAGCCGTACTACACCCAAGCCGGGATTCGAAGAGAGAGAGCACAGCCCGTAACTTTCACTAAAGACCACTTATTGTGGTTCATTGGAGATTTGATGTCGGGCTGTGCTCTCTCTTTTCCAGTCCCTACTCGGATGTGTCGCCATCACGG
----------------------------ATTCGAAGAGAGAGAGCACAG 	1
-----------------------------TTCGAAGAGAGAGAGCACAGC 	1
------------------------------TCGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCCC 	90
-------------------------------CGAAGAGAGAGAGCACAGCC 	6
-------------------------------CGAAGAGAGAGAGCACAGC 	1
-------------------------------CGAAGAGAGAGAGCACAGCCCG 	2
--------------------------------GAAGAGAGAGAGCACAGCCC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAG 	31
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCC 	1
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCAGT 	18
--------------------------------------------------------------------------------------------------------GCTGTGCTCTCTCTTTTCCA 	8
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAG 	5
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCA 	1
---------------------------------------------------------------------------------------------------------CTGTGCTCTCTCTTTTCCAGT 	1
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAG 	1
----------------------------------------------------------------------------------------------------------TGTGCTCTCTCTTTTCCAGT 	1

Overlaps with: MNEST039504 MNEST051407
Overlaps with miRBase pre-miRNAs: ppt-MIR529b
HuntMi prediction: true miRNA