miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGAAGAGAGAGAGCACAGTCC

selected species: Physcomitrella patens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 CGAAGAGAGAGAGCACAGTCC GCTGTACTCTCTCTTTTCCAG up 2 0


Secondary structure

ACTCACCTTTTTCTACATTCAAGCTGGGGTTCGAAGAGAGAGAGCACAGTCCCAGACTTTTCACTCACGACCACTTTGAGTGTCTTATGGTGAACAGTAGTCGGGCTGTACTCTCTCTTTTCCAGTCCCTACTCGAATGTGTTTCTATCGCTG
-------------------------------CGAAGAGAGAGAGCACAGTCC 	12
--------------------------------------------------------------------------------------------------------GCTGTACTCTCTCTTTTCCA 	1
--------------------------------------------------------------------------------------------------------GCTGTACTCTCTCTTTTCC 	1

Overlaps with: MNEST039509 MNEST051412
Overlaps with miRBase pre-miRNAs: ppt-MIR529g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313215 CGAAGAGAGAGAGCACAGTCC GCTGTACTCTCTCTTTTCCAG up 2 0


Secondary structure

ACTCACCTTTTTCTACATTCAAGCTGGGGTTCGAAGAGAGAGAGCACAGTCCCAGACTTTTCACTCACGACCACTTTGAGTGTCTTATGGTGAACAGTAGTCGGGCTGTACTCTCTCTTTTCCAGTCCCTACTCGAATGTGTTTCTATCGCTG
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGTC 	1
-------------------------------CGAAGAGAGAGAGCACAGTCC 	7

Overlaps with: MNEST039509 MNEST051412
Overlaps with miRBase pre-miRNAs: ppt-MIR529g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313214 CGAAGAGAGAGAGCACAGTCC GCTGTACTCTCTCTTTTCCAG up 2 0


Secondary structure

ACTCACCTTTTTCTACATTCAAGCTGGGGTTCGAAGAGAGAGAGCACAGTCCCAGACTTTTCACTCACGACCACTTTGAGTGTCTTATGGTGAACAGTAGTCGGGCTGTACTCTCTCTTTTCCAGTCCCTACTCGAATGTGTTTCTATCGCTG
-----------------------------TTCGAAGAGAGAGAGCACAG 	1
-------------------------------CGAAGAGAGAGAGCACAGTCC 	7
--------------------------------------------------------------------------------------------------------GCTGTACTCTCTCTTTTCCAG 	3
--------------------------------------------------------------------------------------------------------GCTGTACTCTCTCTTTTCC 	1

Overlaps with: MNEST039509 MNEST051412
Overlaps with miRBase pre-miRNAs: ppt-MIR529g
HuntMi prediction: true miRNA