miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGATATATGATGTCGATGTG

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343284-14444 CGATATATGATGTCGATGTGGC AACAGTGACACCATGTATTGGC down 3 0


Secondary structure

CTCCACCCGGGCACCTCGTAGCAACAGTGACACCATGTATTGGCTCCGTGGCGATATATGATGTCGATGTGGCCACTGGGTGCCGCTCTCTA
---CACCCGGGCACCTCGTAGC 	1
----------------------AACAGTGACACCATGTATTGGC 	28
----------------------AACAGTGACACCATGTATTGG 	18
----------------------AACAGTGACACCATGTATTG 	1
----------------------AACAGTGACACCATGTATT 	2
---------------------------------------------------CGATATATGATGTCGATGTGGCC 	4
---------------------------------------------------CGATATATGATGTCGATGTGGC 	115
---------------------------------------------------CGATATATGATGTCGATGTGG 	64
---------------------------------------------------CGATATATGATGTCGATGT 	2
----------------------------------------------------GATATATGATGTCGATGTGG 	1
-----------------------------------------------------ATATATGATGTCGATGTGG 	1
-------------------------------------------------------------------------CACTGGGTGCCGCTCTCTA 	1

Overlaps with: MNEST024872 MNEST024873
Overlaps with miRBase pre-miRNAs: cin-mir-3599
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 CGATATATGATGTCGATGTG CAGTGACACCATGTATTGGC down 3 0


Secondary structure

CCACCCGGGCACCTCGTAGCAACAGTGACACCATGTATTGGCTCCGTGGCGATATATGATGTCGATGTGGCCACTGGGTGCCGCTCTC
CCACCCGGGCACCTCGTAGC 	1
-------------------------------------------------CGATATATGATGTCGATGTG 	6

Overlaps with: MNEST024872 MNEST024873
Overlaps with miRBase pre-miRNAs: cin-mir-3599
HuntMi prediction: true miRNA