miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CGCAGTATATTTTTGTGTTTTG

selected species: Drosophila melanogaster



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM371638-15389 CGCAGTATATTTTTGTGTTTTG AATCACAGGATTATACTGTGAG up 2 0


Secondary structure

TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAG
----------TCGCAGTATATTTTTGTGTTTTG 	1
-----------CGCAGTATATTTTTGTGTT 	7
-----------CGCAGTATATTTTTGTGTTTTG 	3174
-----------CGCAGTATATTTTTGTGTTTT 	90
-----------CGCAGTATATTTTTGTGTTTTGTT 	3
-----------CGCAGTATATTTTTGTGTTTTGT 	32
-----------CGCAGTATATTTTTGTGTTT 	37
------------GCAGTATATTTTTGTGTTTTG 	27
-------------CAGTATATTTTTGTGTTTTG 	1
--------------AGTATATTTTTGTGTTTTG 	1
-------------------------------------------------AAATCACAGGATTATACTGTGAG 	1
--------------------------------------------------AATCACAGGATTATACTGTGAG 	6
--------------------------------------------------AATCACAGGATTATACTGT 	85
--------------------------------------------------AATCACAGGATTATACTGTGA 	86
--------------------------------------------------AATCACAGGATTATACTGTG 	2
---------------------------------------------------ATCACAGGATTATACTGTGAG 	1


Overlaps with: MNEST036453 MNEST036454
Overlaps with miRBase pre-miRNAs: dme-mir-308
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM343833-15151 CGCAGTATATTTTTGTGTTTTG AATCACAGGATTATACTGTGAG up 2 0


Secondary structure

TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAG
-----------CGCAGTATATTTTTGTGTT 	11
-----------CGCAGTATATTTTTGTGTTTT 	69
-----------CGCAGTATATTTTTGTGTTTTG 	4869
-----------CGCAGTATATTTTTGTGTTTTGTT 	1
-----------CGCAGTATATTTTTGTGTTTTGT 	16
-----------CGCAGTATATTTTTGTGTTT 	40
------------GCAGTATATTTTTGTGTTTTG 	34
--------------AGTATATTTTTGTGTTTTG 	3
--------------------------------------------------AATCACAGGATTATACTGTGAG 	2
--------------------------------------------------AATCACAGGATTATACTGT 	7
--------------------------------------------------AATCACAGGATTATACTGTGA 	53


Overlaps with: MNEST036453 MNEST036454
Overlaps with miRBase pre-miRNAs: dme-mir-308
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM343832-15149 CGCAGTATATTTTTGTGTTTTG AATCACAGGATTATACTGTGAG up 2 0


Secondary structure

TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAG
-----------CGCAGTATATTTTTGTGTT 	15
-----------CGCAGTATATTTTTGTGTTTT 	34
-----------CGCAGTATATTTTTGTGTTTTG 	4318
-----------CGCAGTATATTTTTGTGTTTTGT 	8
-----------CGCAGTATATTTTTGTGTTT 	21
------------GCAGTATATTTTTGTGTTTTG 	26
-------------CAGTATATTTTTGTGTTTTG 	1
-------------CAGTATATTTTTGTGTTTTGTT 	1
-------------------------------------------------AAATCACAGGATTATACTGTGAG 	2
--------------------------------------------------AATCACAGGATTATACTGTGAG 	9
--------------------------------------------------AATCACAGGATTATACTGT 	4
--------------------------------------------------AATCACAGGATTATACTGTGA 	88
--------------------------------------------------AATCACAGGATTATACTGTG 	2
---------------------------------------------------ATCACAGGATTATACTGTGAGA 	3


Overlaps with: MNEST036453 MNEST036454
Overlaps with miRBase pre-miRNAs: dme-mir-308
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399100-5263 CGCAGTATATTTTTGTGTTTTG AATCACAGGATTATACTGTGAG up 2 0


Secondary structure

TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAG
-----------CGCAGTATATTTTTGTGTT 	9
-----------CGCAGTATATTTTTGTGTTTT 	50
-----------CGCAGTATATTTTTGTGTTTTG 	2593
-----------CGCAGTATATTTTTGTGTTTTGT 	3
-----------CGCAGTATATTTTTGTGTTT 	22
------------GCAGTATATTTTTGTGTTTTG 	20
-------------CAGTATATTTTTGTGTTTTG 	1
--------------AGTATATTTTTGTGTTTTG 	1
-------------------------------------------------AAATCACAGGATTATACTGTGA 	1
--------------------------------------------------AATCACAGGATTATACTGTGAG 	5
--------------------------------------------------AATCACAGGATTATACTGT 	28
--------------------------------------------------AATCACAGGATTATACTGTGA 	58
--------------------------------------------------AATCACAGGATTATACTGTG 	5


Overlaps with: MNEST036453 MNEST036454
Overlaps with miRBase pre-miRNAs: dme-mir-308
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399101-5265 CGCAGTATATTTTTGTGTTTTG AATCACAGGATTATACTGTGAG up 2 0


Secondary structure

TCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAG
-----------CGCAGTATATTTTTGTGTT 	7
-----------CGCAGTATATTTTTGTGTTTT 	76
-----------CGCAGTATATTTTTGTGTTTTG 	2431
-----------CGCAGTATATTTTTGTGTTTTGT 	7
-----------CGCAGTATATTTTTGTGTTT 	32
------------GCAGTATATTTTTGTGTTTTG 	21
-------------CAGTATATTTTTGTGTTTTG 	2
--------------------------------------------------AATCACAGGATTATACTGTGAG 	4
--------------------------------------------------AATCACAGGATTATACTGT 	73
--------------------------------------------------AATCACAGGATTATACTGTGA 	66
--------------------------------------------------AATCACAGGATTATACTGTG 	3
---------------------------------------------------ATCACAGGATTATACTGTGAGA 	1


Overlaps with: MNEST036453 MNEST036454
Overlaps with miRBase pre-miRNAs: dme-mir-308
HuntMi prediction: true miRNA