miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CGGAACTTTCCAAGGAACAG

selected species: Ciona intestinalis

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343282-14442	CGGAACTTTCCAAGGAACAGG	TGTTGCTGGGAATTCCCAC	up	3	2

Secondary structure

TGAATACAGCCGACGAGCGAACGGAACTTTCCAAGGAACAGGCTTAATGCATATAGTCGGCCTGTTGCTGGGAATTCCCACACGCTAGTCGCGCACACA
---------------------CGGAACTTTCCAAGGAACAGGC 	22
---------------------CGGAACTTTCCAAGGAACAGG 	50

Overlaps with: MNEST024906 MNEST024907
Overlaps with miRBase pre-miRNAs: cin-mir-4001c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343284-14444	CGGAACTTTCCAAGGAACAGGC	CTGTTGCTGGGAATTCCCAC	up	3	2

Secondary structure

TGAATACAGCCGACGAGCGAACGGAACTTTCCAAGGAACAGGCTTAATGCATATAGTCGGCCTGTTGCTGGGAATTCCCACACGCTAGTCGCGCACACA
TGAATACAGCCGACGAGCGAAC 	1
TGAATACAGCCGACGAGCG 	1
--AATACAGCCGACGAGCGAAC 	1
--AATACAGCCGACGAGCGAA 	1
---------------------CGGAACTTTCCAAGGAACAGGCT 	2500
---------------------CGGAACTTTCCAAGGAACAGGC 	8296
---------------------CGGAACTTTCCAAGGAACAGG 	1548
---------------------CGGAACTTTCCAAGGAACAG 	10
---------------------CGGAACTTTCCAAGGAACA 	17
----------------------GGAACTTTCCAAGGAACAGGCT 	29
----------------------GGAACTTTCCAAGGAACAGGC 	6
----------------------GGAACTTTCCAAGGAACAGG 	6
----------------------GGAACTTTCCAAGGAACAG 	1
-----------------------GAACTTTCCAAGGAACAGGCT 	1
------------------------------------------------------------CCTGTTGCTGGGAATTCCCACA 	2
------------------------------------------------------------CCTGTTGCTGGGAATTCCCAC 	2
------------------------------------------------------------CCTGTTGCTGGGAATTCCCA 	1
------------------------------------------------------------CCTGTTGCTGGGAATTCCC 	12
-------------------------------------------------------------CTGTTGCTGGGAATTCCCACAC 	1

Overlaps with: MNEST024906 MNEST024907
Overlaps with miRBase pre-miRNAs: cin-mir-4001c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	CGGAACTTTCCAAGGAACAG	GTTGCTGGGAATTCCCAC	up	3	2

Secondary structure

TGAATACAGCCGACGAGCGAACGGAACTTTCCAAGGAACAGGCTTAATGCATATAGTCGGCCTGTTGCTGGGAATTCCCACACGCTAGTCGCGCACACA
-GAATACAGCCGACGAGCGAA 	70
-GAATACAGCCGACGAGCGA 	3
--AATACAGCCGACGAGCGAAC 	473
--AATACAGCCGACGAGCGAA 	12
--------------------ACGGAACTTTCCAAGGAACA 	1
---------------------CGGAACTTTCCAAGGAACAGGCT 	2
---------------------CGGAACTTTCCAAGGAACAGGC 	1
---------------------CGGAACTTTCCAAGGAACAGG 	1
---------------------CGGAACTTTCCAAGGAACAG 	1563
---------------------CGGAACTTTCCAAGGAACA 	9
----------------------GGAACTTTCCAAGGAACAGG 	10
------------------------AACTTTCCAAGGAACAGGCT 	1
------------------------------------------------------------CCTGTTGCTGGGAATTCCCA 	16
-------------------------------------------------------------CTGTTGCTGGGAATTCCCAC 	1

Overlaps with: MNEST024906 MNEST024907
Overlaps with miRBase pre-miRNAs: cin-mir-4001c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Ciona intestinalis	GSM343285	CGGAACTTTCCAAGGAACAGGC	CTGTTGCTGGGAATTCCCAC	up	3	2

Secondary structure

TGAATACAGCCGACGAGCGAACGGAACTTTCCAAGGAACAGGCTTAATGCATATAGTCGGCCTGTTGCTGGGAATTCCCACACGCTAGTCGCGCACACA
---------------------CGGAACTTTCCAAGGAACAGGCT 	2
---------------------CGGAACTTTCCAAGGAACAGGC 	9
---------------------CGGAACTTTCCAAGGAACAGG 	2
---------------------CGGAACTTTCCAAGGAACAG 	1

Overlaps with: MNEST024906 MNEST024907
Overlaps with miRBase pre-miRNAs: cin-mir-4001c
HuntMi prediction: true miRNA