miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGGCTCTGATACCAATTGATG

selected species: Arabidopsis thaliana



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-----------------------TCGATTGCTGTCAGAGCCAC 	1
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	196
-------------------------------------------------------------CGGCTCTGATACCAATTGAT 	5
-------------------------------------------------------------CGGCTCTGATACCAATTGA 	1
--------------------------------------------------------------GGCTCTGATACCAATTGATG 	3

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-----------------------TCGATTGCTGTCAGAGCCACG 	1
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	5

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-----------------------TCGATTGCTGTCAGAGCCACG 	1
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	20

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM304284 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-----------------------TCGATTGCTGTCAGAGCCAC 	1
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	90

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM304283 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
------------------------------------------------------ATTTGTGCGGCTCTGATACCAAT 	1
------------------------------------------------------ATTTGTGCGGCTCTGATACCAA 	1
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	10

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM304285 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	26

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 CGGCTCTGATACCAATTGATG TCGATTGCTGTCAGAGCCACG down 2 0


Secondary structure

TCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGATACCAATTGATGCTATGGAAACATCGATATTG
-------------------------------------------------------------CGGCTCTGATACCAATTGAT 	3
-------------------------------------------------------------CGGCTCTGATACCAATTGATG 	105
--------------------------------------------------------------GGCTCTGATACCAATTGATG 	1

Overlaps with: MNEST040169 MNEST047075
Overlaps with miRBase pre-miRNAs: ath-MIR845a
HuntMi prediction: true miRNA