miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: CGGCTCTGGGTCTGTGGGGA

selected species: Homo sapiens



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------CCCCTCAGTCCACCAGAGCCCGGA 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	15
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	3

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM569185 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	15
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	7

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494809_Normal_1 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGAG 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	7
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	2

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM569186 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGA 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	25
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	16
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGG 	3
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAGC 	1
------------------------------------------------------------GGCTCTGGGTCTGTGGGGAG 	1

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM569188 CGGCTCTGGGTCTGTGGGGA CCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

GGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCA
-------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	7
-------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	12
-------------------------------------------------CGGCTCTGGGTCTGTGGGG 	2


Overlaps with miRBase pre-miRNAs: ggo-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM569187 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGAG 	3
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	34
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	14

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM651908 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGAG 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	35
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	2

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM651906 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	7
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	4

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Homo sapiens GSM651907 CGGCTCTGGGTCTGTGGGGA CCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

GGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCA
-------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	7
-------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	7
--------------------------------------------------GGCTCTGGGTCTGTGGGGAG 	1


Overlaps with miRBase pre-miRNAs: ggo-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Homo sapiens GSM651907 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	7
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	7
------------------------------------------------------------GGCTCTGGGTCTGTGGGGAG 	1

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Homo sapiens GSM569189 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGAG 	1
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGA 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	15
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	9
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGG 	1

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Homo sapiens GSM494812_HL60 CGGCTCTGGGTCTGTGGGGAG CCCCTCAGTCCACCAGAGCCCGGA down 4 3


Secondary structure

CTGCGGCGCGGGGCGCGTCGCCCCCCTCAGTCCACCAGAGCCCGGATACCTCAGAAATTCGGCTCTGGGTCTGTGGGGAGCGAAATGCAACCCAAACCC
----------------------------------------------------------TCGGCTCTGGGTCTGTGGGGAG 	1
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAG 	13
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGA 	3
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGG 	2
-----------------------------------------------------------CGGCTCTGGGTCTGTGGGGAGC 	1

Overlaps with: MNEST028115 MNEST028999
Overlaps with miRBase pre-miRNAs: mml-mir-760 ptr-mir-760 hsa-mir-760
HuntMi prediction: true miRNA