miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGGTCTGTCACGGAACACGGGA

selected species: Acyrthosiphon pisum



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant CGGTCTGTCACGGAACACGGGA CCGTGTTCTGTGACTGACTCGGC down 2 1


Secondary structure

GCCGCGTCGGTGCCGTGTTCTGTGACTGACTCGGCTGGCAACGGACTGAGCCCTCCGGTCTGTCACGGAACACGGGACCGGCCGCA
------------------------------------------------------CCGGTCTGTCACGGAACACGGGA 	1
-------------------------------------------------------CGGTCTGTCACGGAACACGGGA 	8
-------------------------------------------------------CGGTCTGTCACGGAACACGGG 	3
-------------------------------------------------------CGGTCTGTCACGGAACACGG 	1

Overlaps with: MNEST035109 MNEST035110
Overlaps with miRBase pre-miRNAs: api-mir-3017b-1 api-mir-3017b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Acyrthosiphon pisum GSM502519_unique_quant CGGTCTGTCACGGAACACGGGA CCGTGTTCTGTGACTGACTCGGC down 2 1


Secondary structure

AATTAGTCGGTGCCGTGTTCTGTGACTGACTCGGCTGGCGCCGGACTGGCGGGGGCCAGCCGGTCTGTCACGGAACACGGGACCGGCCGCA
-----------------------------------------------------------CCGGTCTGTCACGGAACACGGGA 	1
------------------------------------------------------------CGGTCTGTCACGGAACACGGGA 	8
------------------------------------------------------------CGGTCTGTCACGGAACACGGG 	3
------------------------------------------------------------CGGTCTGTCACGGAACACGG 	1

Overlaps with: MNEST035111
Overlaps with miRBase pre-miRNAs: api-mir-3017b-3
HuntMi prediction: true miRNA