miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGGTGGGACTTGTAGTTCGGTC

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539853 CGGTGGGACTTGTAGTTCGGTC CTGAACTGCAGTTCCCATCATG up 2 0


Secondary structure

GGCCTGGGGCGCGGTGGGACTTGTAGTTCGGTCTTCGCTTCGGACGCCCAAGTCTGCATAGCGCGTGGTACGGCTGAACTGCAGTTCCCATCATGCCCTGGGA
-----------CGGTGGGACTTGTAGTTCGGTCT 	1
-----------CGGTGGGACTTGTAGTTCGGTC 	5
-----------CGGTGGGACTTGTAGTTCGGT 	1
-------------------------------------------------------------------------CTGAACTGCAGTTCCCATCATG 	1

Overlaps with: MNEST032442
Overlaps with miRBase pre-miRNAs: mmu-mir-1938
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539867 CGGTGGGACTTGTAGTTCGGTC CTGAACTGCAGTTCCCATCATG up 2 0


Secondary structure

GGCCTGGGGCGCGGTGGGACTTGTAGTTCGGTCTTCGCTTCGGACGCCCAAGTCTGCATAGCGCGTGGTACGGCTGAACTGCAGTTCCCATCATGCCCTGGGA
-----------CGGTGGGACTTGTAGTTCGGTC 	5
-----------CGGTGGGACTTGTAGTTCGGT 	5
-------------------------------------------------------------------------CTGAACTGCAGTTCCCATCAT 	1

Overlaps with: MNEST032442
Overlaps with miRBase pre-miRNAs: mmu-mir-1938
HuntMi prediction: true miRNA