miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTAAGGAAATAGTAGCCGTGAT

selected species: Drosophila melanogaster

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
---------------------CTAAGGAAATAGTAGCCGTGA 	2
---------------------CTAAGGAAATAGTAGCCGTGAT 	28
----------------------TAAGGAAATAGTAGCCGTGAT 	11
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTTAG 	1
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTAG 	1
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTAGA 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAG 	1

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
--------------------TCTAAGGAAATAGTAGCCGT 	1
--------------------TCTAAGGAAATAGTAGCCGTG 	7
--------------------TCTAAGGAAATAGTAGCCGTGAT 	27
--------------------TCTAAGGAAATAGTAGCCGTGA 	427
---------------------CTAAGGAAATAGTAGCCGT 	3
---------------------CTAAGGAAATAGTAGCCGTGA 	641
---------------------CTAAGGAAATAGTAGCCGTGATT 	66
---------------------CTAAGGAAATAGTAGCCGTG 	43
---------------------CTAAGGAAATAGTAGCCGTGAT 	6840
----------------------TAAGGAAATAGTAGCCGTGATTT 	1
----------------------TAAGGAAATAGTAGCCGTG 	19
----------------------TAAGGAAATAGTAGCCGTGAT 	2370
----------------------TAAGGAAATAGTAGCCGTGATT 	442
----------------------TAAGGAAATAGTAGCCGTGA 	551
-----------------------AAGGAAATAGTAGCCGTGATTT 	1
-----------------------AAGGAAATAGTAGCCGTGATT 	1
-----------------------AAGGAAATAGTAGCCGTGAT 	11
------------------------AGGAAATAGTAGCCGTGAT 	2
------------------------AGGAAATAGTAGCCGTGATT 	1
-------------------------------------------TTTACCCAAGAATTTTTCACATAT 	2
---------------------------------------------TACCCAAGAATTTTTCACAT 	1
-----------------------------------------------CCCAAGAATTTTTCACATAT 	2
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTTTA 	12
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTT 	14
----------------------------------------------------------------TATCACAGTTGCTGTTTCT 	1
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTTT 	41
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTTTAG 	2
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTTA 	3
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTTAG 	40
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTT 	2
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTTAGA 	1
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTAG 	34
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTT 	1
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTAGA 	59
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTA 	3
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGA 	94
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAG 	52
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGAT 	183
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTA 	6
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGATA 	8
--------------------------------------------------------------------ACAGTTGCTGTTTCTTTTAGATA 	1
--------------------------------------------------------------------ACAGTTGCTGTTTCTTTTAGAT 	3
--------------------------------------------------------------------ACAGTTGCTGTTTCTTTTAGA 	2
--------------------------------------------------------------------ACAGTTGCTGTTTCTTTTAG 	1
---------------------------------------------------------------------CAGTTGCTGTTTCTTTTAGA 	1
---------------------------------------------------------------------CAGTTGCTGTTTCTTTTAG 	1
----------------------------------------------------------------------AGTTGCTGTTTCTTTTAGATA 	1
----------------------------------------------------------------------AGTTGCTGTTTCTTTTAGA 	1

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
---------------------CTAAGGAAATAGTAGCCGTGAT 	23
---------------------CTAAGGAAATAGTAGCCGT 	1
---------------------CTAAGGAAATAGTAGCCGTGA 	1
---------------------CTAAGGAAATAGTAGCCGTGATT 	3
----------------------TAAGGAAATAGTAGCCGTGATT 	4
----------------------TAAGGAAATAGTAGCCGTGATTT 	2
----------------------TAAGGAAATAGTAGCCGTGAT 	11
----------------------TAAGGAAATAGTAGCCGTGA 	2
------------------------------------------------------------------TCACAGTTGCTGTTTCTTTTAGA 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGA 	3
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGAT 	1

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
---------------------CTAAGGAAATAGTAGCCGTGAT 	5
----------------------TAAGGAAATAGTAGCCGTGATT 	1
----------------------TAAGGAAATAGTAGCCGTGAT 	3

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM371638-15389	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
--------------------TCTAAGGAAATAGTAGCCGTG 	4
--------------------TCTAAGGAAATAGTAGCCGTGA 	20
---------------------CTAAGGAAATAGTAGCCGTGAT 	84
---------------------CTAAGGAAATAGTAGCCGTGA 	26
---------------------CTAAGGAAATAGTAGCCGTGATT 	15
---------------------CTAAGGAAATAGTAGCCGTG 	1
----------------------TAAGGAAATAGTAGCCGTGATT 	12
----------------------TAAGGAAATAGTAGCCGTGAT 	9
----------------------TAAGGAAATAGTAGCCGTGA 	6
-----------------------------------------------------------------ATCACAGTTGCTGTTTCTTTT 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGA 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAG 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGAT 	10

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM399100-5263	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
--------------------TCTAAGGAAATAGTAGCCGTG 	2
--------------------TCTAAGGAAATAGTAGCCGTGA 	1
---------------------CTAAGGAAATAGTAGCCGTGA 	2
---------------------CTAAGGAAATAGTAGCCGTGATT 	1
---------------------CTAAGGAAATAGTAGCCGTG 	1
---------------------CTAAGGAAATAGTAGCCGTGAT 	17
----------------------TAAGGAAATAGTAGCCGTGATTT 	1
----------------------TAAGGAAATAGTAGCCGTGAT 	2
----------------------TAAGGAAATAGTAGCCGTGATT 	3
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTTT 	2
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAG 	2
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGAT 	4

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM399101-5265	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
--------------------TCTAAGGAAATAGTAGCCGTG 	1
--------------------TCTAAGGAAATAGTAGCCGTGA 	4
---------------------CTAAGGAAATAGTAGCCGTGA 	3
---------------------CTAAGGAAATAGTAGCCGTGATT 	3
---------------------CTAAGGAAATAGTAGCCGTG 	1
---------------------CTAAGGAAATAGTAGCCGTGAT 	22
----------------------TAAGGAAATAGTAGCCGTGAT 	8
----------------------TAAGGAAATAGTAGCCGTGATT 	5
----------------------TAAGGAAATAGTAGCCGTGA 	2
----------------------------------------------------------------TATCACAGTTGCTGTTTCTTT 	1
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAG 	2
-------------------------------------------------------------------CACAGTTGCTGTTTCTTTTAGAT 	1

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286604-9792	CTAAGGAAATAGTAGCCGTGAT	CACAGTTGCTGTTTCTTTTAGAT	up	1	1

Secondary structure

CCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGC
---------------------CTAAGGAAATAGTAGCCGTGAT 	6

Overlaps with: MNEST036565 MNEST036566
Overlaps with miRBase pre-miRNAs: dme-mir-994
HuntMi prediction: true miRNA