miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTAAGTACTAGTGCCGCAGGAG

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCTAAGTGCTTATCA up 2 2


Secondary structure

GAAGGAAACTAAACCTTGTTCCTAAGTACTAGTGCCGCAGGAGCGTTTTGTAGTATCTCCTGCTGCCTAAGTGCTTATCAATGAGGGTTTAGTGACGT
---------------------CTAAGTACTAGTGCCGCAGGAG 	69
---------------------CTAAGTACTAGTGCCGCAGGA 	15
---------------------CTAAGTACTAGTGCCGCAG 	1
----------------------TAAGTACTAGTGCCGCAGGAG 	1

Overlaps with: MNEST035544
Overlaps with miRBase pre-miRNAs: bmo-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCTAAGTGCTTATCA up 2 2


Secondary structure

GAAGGAAACTAAACCTTGTTCCTAAGTACTAGTGCCGCAGGAGCGTTTTGTAGTATCTCCTGCTGCCTAAGTGCTTATCAATGAGGGTTTAGTGACGT
---------------------CTAAGTACTAGTGCCGCAGGAG 	24
---------------------CTAAGTACTAGTGCCGCAGGA 	21
---------------------CTAAGTACTAGTGCCGCAG 	1
----------------------TAAGTACTAGTGCCGCAGGAG 	1
----------------------------------------------------------CCTGCTGCCTAAGTGCTTATCA 	2

Overlaps with: MNEST035544
Overlaps with miRBase pre-miRNAs: bmo-mir-252
HuntMi prediction: true miRNA