miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTAAGTACTAGTGCCGCAGGAG

selected species: Drosophila melanogaster



25 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	3
-----------CTAAGTACTAGTGCCGCAG 	2
-----------CTAAGTACTAGTGCCGCAGGAG 	411
-----------CTAAGTACTAGTGCCGCAGGA 	23
-----------CTAAGTACTAGTGCCGCAGGAGT 	17
-----------CTAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGT 	5
------------TAAGTACTAGTGCCGCAGGAG 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	3
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	4
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	7
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	1
-----------------------------------------------------------GCTGCCCAAGTGCTTATTA 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAG 	50
-----------CTAAGTACTAGTGCCGCAGG 	249
-----------CTAAGTACTAGTGCCGCAGGAG 	18943
-----------CTAAGTACTAGTGCCGCAGGA 	2509
-----------CTAAGTACTAGTGCCGCAGGAGT 	730
-----------CTAAGTACTAGTGCCGCAGGAGTT 	20
------------TAAGTACTAGTGCCGCAGG 	2
------------TAAGTACTAGTGCCGCAGGAGTT 	4
------------TAAGTACTAGTGCCGCAGGAGT 	68
------------TAAGTACTAGTGCCGCAGGA 	13
------------TAAGTACTAGTGCCGCAGGAG 	92
-------------AAGTACTAGTGCCGCAGGAG 	2
--------------AGTACTAGTGCCGCAGGAG 	2
--------------AGTACTAGTGCCGCAGGAGT 	1
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	3
---------------------------------TTAGGTTCGTGTCCGCAATAC 	2
---------------------------------TTAGGTTCGTGTCCGCAATACC 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	3
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTAT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAAA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	30
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	148
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	3
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	5
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	38
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	11
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	34
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	2
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	3
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	5
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
----------CCTAAGTACTAGTGCCGCAGGAG 	1
-----------CTAAGTACTAGTGCCGCAG 	10
-----------CTAAGTACTAGTGCCGCAGGAG 	4739
-----------CTAAGTACTAGTGCCGCAGG 	96
-----------CTAAGTACTAGTGCCGCAGGAGT 	260
-----------CTAAGTACTAGTGCCGCAGGA 	883
-----------CTAAGTACTAGTGCCGCAGGAGTT 	16
------------TAAGTACTAGTGCCGCAGGA 	3
------------TAAGTACTAGTGCCGCAGGAGTT 	4
------------TAAGTACTAGTGCCGCAGGAGT 	16
------------TAAGTACTAGTGCCGCAGGAG 	32
-------------AAGTACTAGTGCCGCAGGAG 	1
--------------AGTACTAGTGCCGCAGGAG 	1
--------------------------------GTTAGGTTCGTGTCCGCAATACC 	1
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	4
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTAT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	33
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	93
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	3
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	27
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	15
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	30
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	3
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	2
----------------------------------------------------------TGCTGCCCAAGTGCTTATT 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
---------TCCTAAGTACTAGTGCCGCAGGAG 	2
----------CCTAAGTACTAGTGCCGCAGGAG 	9
----------CCTAAGTACTAGTGCCGCAGG 	1
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	2
-----------CTAAGTACTAGTGCCGCAG 	11
-----------CTAAGTACTAGTGCCGCAGG 	356
-----------CTAAGTACTAGTGCCGCAGGAGT 	730
-----------CTAAGTACTAGTGCCGCAGGA 	4806
-----------CTAAGTACTAGTGCCGCAGGAG 	11403
-----------CTAAGTACTAGTGCCGCAGGAGTT 	40
------------TAAGTACTAGTGCCGCAGGAGTT 	9
------------TAAGTACTAGTGCCGCAGGAG 	119
------------TAAGTACTAGTGCCGCAGG 	5
------------TAAGTACTAGTGCCGCAGGA 	47
------------TAAGTACTAGTGCCGCAGGAGT 	48
-------------AAGTACTAGTGCCGCAGGAG 	8
-------------AAGTACTAGTGCCGCAGGA 	2
--------------AGTACTAGTGCCGCAGGAG 	7
--------------------------------GTTAGGTTCGTGTCCGCAATACCTC 	2
---------------------------------TTAGGTTCGTGTCCGCAATACC 	1
---------------------------------TTAGGTTCGTGTCCGCAATAC 	2
---------------------------------TTAGGTTCGTGTCCGCAATA 	1
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	5
----------------------------------TAGGTTCGTGTCCGCAATACC 	1
---------------------------------------------------TACCTCCTGCTGCCCAAGTGCT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	2
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	9
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	29
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	4
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	33
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	82
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	29
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	53
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	9
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	11
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAA 	4
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	28
-----------CTAAGTACTAGTGCCGCAG 	5
-----------CTAAGTACTAGTGCCGCAGGAG 	1453
-----------CTAAGTACTAGTGCCGCAGGA 	232
-----------CTAAGTACTAGTGCCGCAGGAGT 	70
-----------CTAAGTACTAGTGCCGCAGGAGTT 	4
------------TAAGTACTAGTGCCGCAGGAGT 	3
------------TAAGTACTAGTGCCGCAGGA 	1
------------TAAGTACTAGTGCCGCAGGAG 	6
-------------AAGTACTAGTGCCGCAGGAG 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	6
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	3
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	11
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	9
-----------CTAAGTACTAGTGCCGCAG 	5
-----------CTAAGTACTAGTGCCGCAGG 	117
-----------CTAAGTACTAGTGCCGCAGGAG 	19044
-----------CTAAGTACTAGTGCCGCAGGA 	948
-----------CTAAGTACTAGTGCCGCAGGAGT 	577
-----------CTAAGTACTAGTGCCGCAGGAGTT 	29
------------TAAGTACTAGTGCCGCAGGAGTT 	5
------------TAAGTACTAGTGCCGCAGGAGT 	84
------------TAAGTACTAGTGCCGCAGGA 	3
------------TAAGTACTAGTGCCGCAGGAG 	74
-------------AAGTACTAGTGCCGCAGGA 	1
-------------AAGTACTAGTGCCGCAGGAG 	1
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	2
----------------------------------TAGGTTCGTGTCCGCAATACC 	1
---------------------------------------------------TACCTCCTGCTGCCCAAGTGCT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	10
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	6
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTAT 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	136
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	150
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	33
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	33
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	145
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	4
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	16
----------------------------------------------------------TGCTGCCCAAGTGCTTATTA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM385822-16273 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAG 	2
-----------CTAAGTACTAGTGCCGCAGGAG 	7


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM360256-14324 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	2
-----------CTAAGTACTAGTGCCGCAGGAG 	448
-----------CTAAGTACTAGTGCCGCAGGA 	26
-----------CTAAGTACTAGTGCCGCAGGAGT 	15
-----------CTAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGT 	3
------------TAAGTACTAGTGCCGCAGGAG 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	6
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	9


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
---------TCCTAAGTACTAGTGCCGCA 	1
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	6
-----------CTAAGTACTAGTGCCGCAG 	13
-----------CTAAGTACTAGTGCCGCAGG 	272
-----------CTAAGTACTAGTGCCGCAGGAGT 	723
-----------CTAAGTACTAGTGCCGCAGGA 	9111
-----------CTAAGTACTAGTGCCGCAGGAG 	10593
-----------CTAAGTACTAGTGCCGCAGGAGTT 	60
------------TAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAG 	163
------------TAAGTACTAGTGCCGCAGG 	5
------------TAAGTACTAGTGCCGCAGGA 	107
------------TAAGTACTAGTGCCGCAGGAGT 	44
-------------AAGTACTAGTGCCGCAGGAG 	4
--------------AGTACTAGTGCCGCAGGAG 	2
----------------TACTAGTGCCGCAGGAGTTAGG 	1
--------------------------------GTTAGGTTCGTGTCCGCAA 	1
---------------------------------TTAGGTTCGTGTCCGCAATACC 	2
---------------------------------TTAGGTTCGTGTCCGCAATAC 	5
---------------------------------TTAGGTTCGTGTCCGCAATA 	1
---------------------------------------------------TACCTCCTGCTGCCCAAGTGCT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTAT 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	3
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	10
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	31
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	4
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	36
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	103
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	15
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	22
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
----------CCTAAGTACTAGTGCCGCAGGAGT 	2
----------CCTAAGTACTAGTGCCGCAGGAG 	8
----------CCTAAGTACTAGTGCCGCA 	1
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	4
-----------CTAAGTACTAGTGCCGCAGG 	480
-----------CTAAGTACTAGTGCCGCAG 	18
-----------CTAAGTACTAGTGCCGCAGGAGT 	1239
-----------CTAAGTACTAGTGCCGCAGGA 	12242
-----------CTAAGTACTAGTGCCGCAGGAG 	16010
-----------CTAAGTACTAGTGCCGCAGGAGTT 	100
------------TAAGTACTAGTGCCGCAGGAGTT 	15
------------TAAGTACTAGTGCCGCAGGAG 	190
------------TAAGTACTAGTGCCGCAGG 	2
------------TAAGTACTAGTGCCGCAGGA 	124
------------TAAGTACTAGTGCCGCAGGAGT 	39
------------TAAGTACTAGTGCCGCAGGAGTTA 	1
-------------AAGTACTAGTGCCGCAGGAG 	9
-------------AAGTACTAGTGCCGCAGGA 	2
--------------AGTACTAGTGCCGCAGGAG 	1
---------------------------------TTAGGTTCGTGTCCGCAATACC 	1
---------------------------------TTAGGTTCGTGTCCGCAATAC 	4
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	4
----------------------------------TAGGTTCGTGTCCGCAATACC 	2
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	4
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	7
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	49
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	7
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	37
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	130
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	4
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	7
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	102
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	164
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	22
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	50
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAA 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM371638-15389 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
----------CCTAAGTACTAGTGCCGCAGGAG 	2
-----------CTAAGTACTAGTGCCGCAGG 	68
-----------CTAAGTACTAGTGCCGCAGGAGT 	314
-----------CTAAGTACTAGTGCCGCAGGA 	510
-----------CTAAGTACTAGTGCCGCAGGAG 	10648
-----------CTAAGTACTAGTGCCGCAGGAGTT 	20
------------TAAGTACTAGTGCCGCAGGAGTT 	7
------------TAAGTACTAGTGCCGCAGGAG 	826
------------TAAGTACTAGTGCCGCAGG 	1
------------TAAGTACTAGTGCCGCAGGA 	31
------------TAAGTACTAGTGCCGCAGGAGT 	124
-------------AAGTACTAGTGCCGCAGGAG 	11
-------------AAGTACTAGTGCCGCAGGA 	1
-------------AAGTACTAGTGCCGCAGGAGT 	4
--------------AGTACTAGTGCCGCAGGAG 	1
----------------------------------TAGGTTCGTGTCCGCAATACCT 	1
----------------------------------TAGGTTCGTGTCCGCAATACC 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	5
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	4
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	7
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	15
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	15
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	8


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM286605-9793 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	11
-----------CTAAGTACTAGTGCCGCAGGAG 	715
-----------CTAAGTACTAGTGCCGCAGGAGT 	22
-----------CTAAGTACTAGTGCCGCAGGA 	80
-----------CTAAGTACTAGTGCCGCAGGAGTT 	4
------------TAAGTACTAGTGCCGCAGGA 	3
------------TAAGTACTAGTGCCGCAGGAGT 	3
------------TAAGTACTAGTGCCGCAGGAG 	4
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	6
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	5
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	4
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM343833-15151 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
----------CCTAAGTACTAGTGCCGCAGGAG 	1
-----------CTAAGTACTAGTGCCGCAGG 	48
-----------CTAAGTACTAGTGCCGCAG 	4
-----------CTAAGTACTAGTGCCGCAGGAG 	2588
-----------CTAAGTACTAGTGCCGCAGGAGT 	156
-----------CTAAGTACTAGTGCCGCAGGA 	241
-----------CTAAGTACTAGTGCCGCAGGAGTT 	15
------------TAAGTACTAGTGCCGCAGGA 	11
------------TAAGTACTAGTGCCGCAGGAGTT 	6
------------TAAGTACTAGTGCCGCAGGAGT 	57
------------TAAGTACTAGTGCCGCAGGAG 	119
-------------AAGTACTAGTGCCGCAGGAG 	1
-------------AAGTACTAGTGCCGCAGGAGT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTAT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	5
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	7
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	5
--------------------------------------------------------CCTGCTGCCCAAGTGCTTA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	2
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM343832-15149 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAG 	8
-----------CTAAGTACTAGTGCCGCAGG 	64
-----------CTAAGTACTAGTGCCGCAGGAG 	2047
-----------CTAAGTACTAGTGCCGCAGGAGT 	140
-----------CTAAGTACTAGTGCCGCAGGA 	195
-----------CTAAGTACTAGTGCCGCAGGAGTT 	23
------------TAAGTACTAGTGCCGCAGGA 	1
------------TAAGTACTAGTGCCGCAGGAGTT 	8
------------TAAGTACTAGTGCCGCAGGAGT 	48
------------TAAGTACTAGTGCCGCAGGAG 	89
-------------AAGTACTAGTGCCGCAGGAG 	1
-------------AAGTACTAGTGCCGCAGGAGTT 	2
-------------AAGTACTAGTGCCGCAGGA 	1
------------------CTAGTGCCGCAGGAGTTAG 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	3
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	2
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM399100-5263 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAG 	12
-----------CTAAGTACTAGTGCCGCAGG 	1
-----------CTAAGTACTAGTGCCGCAGGA 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM360260-14326 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	1
-----------CTAAGTACTAGTGCCGCAGGAGTTAG 	1
-----------CTAAGTACTAGTGCCGCAGG 	122
-----------CTAAGTACTAGTGCCGCAG 	8
-----------CTAAGTACTAGTGCCGCAGGAG 	16497
-----------CTAAGTACTAGTGCCGCAGGA 	903
-----------CTAAGTACTAGTGCCGCAGGAGT 	469
-----------CTAAGTACTAGTGCCGCAGGAGTT 	20
------------TAAGTACTAGTGCCGCAGGAGTT 	4
------------TAAGTACTAGTGCCGCAGGAGT 	58
------------TAAGTACTAGTGCCGCAGGA 	1
------------TAAGTACTAGTGCCGCAGGAG 	47
-------------AAGTACTAGTGCCGCAGGAG 	1
--------------AGTACTAGTGCCGCAGGAG 	2
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	1
---------------------------------TTAGGTTCGTGTCCGCAATAC 	1
---------------------------------------------------TACCTCCTGCTGCCCAAGTGCT 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	6
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	74
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	110
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	21
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	2
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	30
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	103
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	4
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	12


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM322543-14323 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	15
-----------CTAAGTACTAGTGCCGCAGGA 	12708
-----------CTAAGTACTAGTGCCGCAGGAGT 	3019
-----------CTAAGTACTAGTGCCGCAGGAGTT 	220
-----------CTAAGTACTAGTGCCGCAGG 	2118
-----------CTAAGTACTAGTGCCGCAG 	507
-----------CTAAGTACTAGTGCCGCAGGAG 	127194
------------TAAGTACTAGTGCCGCAGGA 	54
------------TAAGTACTAGTGCCGCAGG 	10
------------TAAGTACTAGTGCCGCAGGAGTT 	35
------------TAAGTACTAGTGCCGCAGGAG 	491
------------TAAGTACTAGTGCCGCAGGAGT 	490
-------------AAGTACTAGTGCCGCAGGA 	1
-------------AAGTACTAGTGCCGCAGGAG 	9
-------------AAGTACTAGTGCCGCAGGAGT 	2
--------------AGTACTAGTGCCGCAGGAG 	13
--------------AGTACTAGTGCCGCAGGAGT 	3
----------------TACTAGTGCCGCAGGAGTT 	1
--------------------------------GTTAGGTTCGTGTCCGCAATACCTC 	2
---------------------------------TTAGGTTCGTGTCCGCAATAC 	3
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	18
----------------------------------TAGGTTCGTGTCCGCAATACC 	2
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	19
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	9
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	67
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	239
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	965
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	7
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	460
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	249
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	18
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	120
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAAA 	6
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	9
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAA 	2
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	18
----------------------------------------------------------TGCTGCCCAAGTGCTTATTA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Drosophila melanogaster GSM286607-9796 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	10
-----------CTAAGTACTAGTGCCGCAG 	5
-----------CTAAGTACTAGTGCCGCAGGAG 	3083
-----------CTAAGTACTAGTGCCGCAGGA 	115
-----------CTAAGTACTAGTGCCGCAGGAGT 	98
-----------CTAAGTACTAGTGCCGCAGGAGTT 	12
------------TAAGTACTAGTGCCGCAGGAGTT 	3
------------TAAGTACTAGTGCCGCAGGAGT 	17
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	3
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	9
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	37
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	3
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	63
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAAA 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Drosophila melanogaster GSM399101-5265 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAG 	1
-----------CTAAGTACTAGTGCCGCAGGAG 	20
-----------CTAAGTACTAGTGCCGCAGGA 	3
------------TAAGTACTAGTGCCGCAGGAG 	1


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Drosophila melanogaster GSM286604-9792 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAG 	11
-----------CTAAGTACTAGTGCCGCAGG 	89
-----------CTAAGTACTAGTGCCGCAGGAG 	4958
-----------CTAAGTACTAGTGCCGCAGGA 	773
-----------CTAAGTACTAGTGCCGCAGGAGT 	235
-----------CTAAGTACTAGTGCCGCAGGAGTT 	6
------------TAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGT 	19
------------TAAGTACTAGTGCCGCAGGA 	7
------------TAAGTACTAGTGCCGCAGGAG 	27
--------------AGTACTAGTGCCGCAGGAG 	2
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	17
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	68
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	41
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	9
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	14
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	10
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Drosophila melanogaster GSM385744-16261 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGA 	1
-----------CTAAGTACTAGTGCCGCAGGAG 	11


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Drosophila melanogaster GSM322208-14317 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	1
-----------CTAAGTACTAGTGCCGCAGG 	67
-----------CTAAGTACTAGTGCCGCAG 	30
-----------CTAAGTACTAGTGCCGCAGGAG 	1928
-----------CTAAGTACTAGTGCCGCAGGAGT 	90
-----------CTAAGTACTAGTGCCGCAGGA 	304
-----------CTAAGTACTAGTGCCGCAGGAGTT 	3
------------TAAGTACTAGTGCCGCAGGA 	1
------------TAAGTACTAGTGCCGCAGGAGTT 	1
------------TAAGTACTAGTGCCGCAGGAGT 	13
------------TAAGTACTAGTGCCGCAGGAG 	4
--------------AGTACTAGTGCCGCAGGAG 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	6
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	9
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	3
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	8


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Drosophila melanogaster GSM385748-16264 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGGAG 	26
-----------CTAAGTACTAGTGCCGCAGG 	1
-----------CTAAGTACTAGTGCCGCAGGA 	3


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Drosophila melanogaster GSM399110-16285 CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
-----------CTAAGTACTAGTGCCGCAGG 	7
-----------CTAAGTACTAGTGCCGCAG 	6
-----------CTAAGTACTAGTGCCGCAGGAG 	906
-----------CTAAGTACTAGTGCCGCAGGA 	119
-----------CTAAGTACTAGTGCCGCAGGAGT 	31
------------TAAGTACTAGTGCCGCAGGAGT 	20
------------TAAGTACTAGTGCCGCAGGA 	1
------------TAAGTACTAGTGCCGCAGGAG 	21
--------------AGTACTAGTGCCGCAGGAG 	2
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	1
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	4
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	16
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	7
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	26


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated CTAAGTACTAGTGCCGCAGGAG CCTGCTGCCCAAGTGCTTATTA up 5 0


Secondary structure

AGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG
---------TCCTAAGTACTAGTGCCGCAGGA 	1
---------TCCTAAGTACTAGTGCCGCAGGAG 	1
----------CCTAAGTACTAGTGCCGCAGGA 	2
----------CCTAAGTACTAGTGCCGCAGGAGT 	8
----------CCTAAGTACTAGTGCCGCAGG 	1
----------CCTAAGTACTAGTGCCGCAGGAG 	35
-----------CTAAGTACTAGTGCCGCAGGAGTTA 	2
-----------CTAAGTACTAGTGCCGCAGGA 	4542
-----------CTAAGTACTAGTGCCGCAGGAGT 	1385
-----------CTAAGTACTAGTGCCGCAGGAGTT 	82
-----------CTAAGTACTAGTGCCGCAGGAGTTAG 	1
-----------CTAAGTACTAGTGCCGCAG 	24
-----------CTAAGTACTAGTGCCGCAGG 	281
-----------CTAAGTACTAGTGCCGCAGGAG 	14528
------------TAAGTACTAGTGCCGCAGGA 	64
------------TAAGTACTAGTGCCGCAGG 	5
------------TAAGTACTAGTGCCGCAGGAGTT 	25
------------TAAGTACTAGTGCCGCAGGAGT 	119
------------TAAGTACTAGTGCCGCAGGAG 	284
-------------AAGTACTAGTGCCGCAGGA 	2
-------------AAGTACTAGTGCCGCAGGAG 	38
-------------AAGTACTAGTGCCGCAGGAGT 	6
--------------AGTACTAGTGCCGCAGGAG 	3
---------------GTACTAGTGCCGCAGGAGT 	1
----------------TACTAGTGCCGCAGGAGTTAG 	1
---------------------------------TTAGGTTCGTGTCCGCAATAC 	3
---------------------------------TTAGGTTCGTGTCCGCAATACC 	3
---------------------------------TTAGGTTCGTGTCCGCAATA 	1
---------------------------------TTAGGTTCGTGTCCGCAATACCT 	5
----------------------------------TAGGTTCGTGTCCGCAATACC 	1
---------------------------------------------------TACCTCCTGCTGCCCAAGTGCT 	1
----------------------------------------------------ACCTCCTGCTGCCCAAGTGCTTATTA 	1
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATT 	2
------------------------------------------------------CTCCTGCTGCCCAAGTGCTTATTA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTA 	64
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTA 	10
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATT 	196
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTATTAA 	2
-------------------------------------------------------TCCTGCTGCCCAAGTGCTT 	4
-------------------------------------------------------TCCTGCTGCCCAAGTGCTTAT 	57
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAA 	4
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTA 	96
--------------------------------------------------------CCTGCTGCCCAAGTGCTTAT 	4
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATTAAA 	1
--------------------------------------------------------CCTGCTGCCCAAGTGCTTATT 	67
---------------------------------------------------------CTGCTGCCCAAGTGCTTATT 	16
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTAA 	1
---------------------------------------------------------CTGCTGCCCAAGTGCTTATTA 	23
---------------------------------------------------------CTGCTGCCCAAGTGCTTAT 	2
----------------------------------------------------------TGCTGCCCAAGTGCTTATT 	2


Overlaps with: MNEST036403 MNEST036404
Overlaps with miRBase pre-miRNAs: dme-mir-252 dsi-mir-252
HuntMi prediction: true miRNA