miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CTCACAGTCTGCACAGCTCTC

selected species: Physcomitrella patens



19 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTATGAGAA down 2 0


Secondary structure

GAAAGAGGGTTAGCGACATTGAGAGCTGTTCAGACTATGAGAAAGTGTGTGGAAGAGGATTTGGTGACTTGAACTGGTGCTTCAAGGAAAGCCTAAAGTCCAAGTTCCACTCTTGCTCTCACAGTCTGCACAGCTCTCTGTATCTCTTCCCCTAGTA
----------------------GAGCTGTTCAGACTATGAGAA 	1282
----------------------GAGCTGTTCAGACTATGAGA 	22
----------------------GAGCTGTTCAGACTATGAGAAA 	21
-----------------------AGCTGTTCAGACTATGAGAA 	54
-----------------------AGCTGTTCAGACTATGAGAAA 	2
-----------------------AGCTGTTCAGACTATGAGA 	1
------------------------GCTGTTCAGACTATGAGAAA 	2
------------------------GCTGTTCAGACTATGAGAA 	87
-----------------------------------------------------------------------------------------------------------------TGCTCTCACAGTCTGCACAGCTCTC 	5
--------------------------------------------------------------------------------------------------------------------TCTCACAGTCTGCACAGCTCT 	1
---------------------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	5745
---------------------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
---------------------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	13
---------------------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	39
----------------------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	4
----------------------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	186
----------------------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	4
-----------------------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	10


Overlaps with: MNEST039513 MNEST051415
Overlaps with miRBase pre-miRNAs: ppt-MIR533c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	34
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	69
--------------------------------GAGCTGGCCAGGCTGTGAGG 	5
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	7
---------------------------------AGCTGGCCAGGCTGTGAGGGACG 	4
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	20
---------------------------------AGCTGGCCAGGCTGTGAGGG 	9
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	6
----------------------------------GCTGGCCAGGCTGTGAGGGA 	2
----------------------------------GCTGGCCAGGCTGTGAGGG 	2
----------------------------------GCTGGCCAGGCTGTGAGGGAC 	3
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTCTC 	18
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTC 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTCC 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	36
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCT 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	33
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	5745
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	39
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	186
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	4
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	10


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGAG 	27
----------------------GAGCTGTTCAGACTCTGAGA 	7
-----------------------AGCTGTTCAGACTCTGAGAG 	6
------------------------GCTGTTCAGACTCTGAGAGAG 	1
------------------------GCTGTTCAGACTCTGAGAG 	2
--------------------------TGTTCAGACTCTGAGAGAGGGGTG 	1
--------------------------------------------------------------------------ACACTCGTCGCTCACAGTCTG 	1
---------------------------------------------------------------------------------TCGCTCACAGTCTGCACAGCT 	1
---------------------------------------------------------------------------------TCGCTCACAGTCTGCACAGCTCTC 	1
----------------------------------------------------------------------------------CGCTCACAGTCTGCACAGCTC 	1
----------------------------------------------------------------------------------CGCTCACAGTCTGCACAGCTCTC 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	5745
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	13
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	39
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	4
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	186
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	4
--------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	10


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	2
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	22
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	19
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	2
---------------------------------AGCTGGCCAGGCTGTGAGGG 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGACG 	1
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTCTC 	1
-------------------------------------------------------------------------------------------------------TCCTCACAGTCTGCACAGCTCTC 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	3
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	4
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	327
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	2
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	68
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	1


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGA 	1
----------------------GAGCTGTTCAGACTCTGAGAG 	18
----------------------GAGCTGTTCAGACTCTGAGAGA 	2
-----------------------AGCTGTTCAGACTCTGAGAG 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	4
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	327
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	1
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	68
--------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	1
---------------------------------------------------------------------------------------ACAGTCTGCACAGCTCTCT 	2


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGG 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	16
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	1


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115095 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
-----------------------AGCTGTTCAGACTCTGAGAG 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	16
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	1


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313213 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	18
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	19
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGACG 	1
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTCTC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	7
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	340
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	58


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313213 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGA 	2
----------------------GAGCTGTTCAGACTCTGAGAG 	30
-----------------------AGCTGTTCAGACTCTGAGAG 	4
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	7
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	340
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	1
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	58
--------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTCT 	1


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM313215 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGG 	5
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	83
--------------------------------GAGCTGGCCAGGCTGTGAG 	1
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	77
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	5
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	31
---------------------------------AGCTGGCCAGGCTGTGAGG 	2
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	2
---------------------------------AGCTGGCCAGGCTGTGAGGG 	13
----------------------------------GCTGGCCAGGCTGTGAGGGA 	3
----------------------------------------------------------------------------------------------------TCCTCCTCACAGTCTGCACAGCTCTC 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	8
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCT 	4
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	6
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	711
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	2
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	42
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTCC 	1


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM313215 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGAG 	37
----------------------GAGCTGTTCAGACTCTGAGA 	3
-----------------------AGCTGTTCAGACTCTGAGAGA 	1
-----------------------AGCTGTTCAGACTCTGAGAG 	3
------------------------GCTGTTCAGACTCTGAGAG 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	6
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	711
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	4
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	1
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	42


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	14
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	21
--------------------------------GAGCTGGCCAGGCTGTGAGG 	2
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	5
---------------------------------AGCTGGCCAGGCTGTGAGGG 	4
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	7
----------------------------------GCTGGCCAGGCTGTGAGGGA 	4
----------------------------------GCTGGCCAGGCTGTGAGGG 	1
----------------------------------GCTGGCCAGGCTGTGAGGGACG 	1
----------------------------------GCTGGCCAGGCTGTGAGGGAC 	1
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCT 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	3
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCT 	2
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	392
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	9
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	34


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM115096 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGAGA 	1
----------------------GAGCTGTTCAGACTCTGAGAG 	6
----------------------GAGCTGTTCAGACTCTGAGA 	1
-----------------------AGCTGTTCAGACTCTGAGAGA 	1
-----------------------AGCTGTTCAGACTCTGAGAG 	4
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	392
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	9
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	34


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313216 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	4
--------------------------------GAGCTGGCCAGGCTGTGAGG 	3
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	79
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	43
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	23
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	3
---------------------------------AGCTGGCCAGGCTGTGAGGG 	7
---------------------------------AGCTGGCCAGGCTGTGAGGGACG 	2
----------------------------------GCTGGCCAGGCTGTGAGGGAC 	1
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTCTC 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	5
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	18
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	7
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	406
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	50
---------------------------------------------------------------------------------------------------------------GTCTGCACAGCTCTCCGTCT 	1


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313216 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGA 	23
----------------------GAGCTGTTCAGACTCTGAGAGA 	11
----------------------GAGCTGTTCAGACTCTGAGAG 	362
----------------------GAGCTGTTCAGACTCTGAG 	1
-----------------------AGCTGTTCAGACTCTGAGAGA 	7
-----------------------AGCTGTTCAGACTCTGAGAG 	34
---------------------------------------------------------------------------------TCGCTCACAGTCTGCACAGCTCTC 	1
----------------------------------------------------------------------------------CGCTCACAGTCTGCACAGCTC 	1
-----------------------------------------------------------------------------------GCTCACAGTCTGCACAGCTCT 	7
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	7
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	406
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	2
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	50


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313214 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAGG 	12
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	196
--------------------------------GAGCTGGCCAGGCTGTGAG 	5
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	120
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	3
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	46
---------------------------------AGCTGGCCAGGCTGTGAGG 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	2
---------------------------------AGCTGGCCAGGCTGTGAGGG 	17
----------------------------------GCTGGCCAGGCTGTGAGGGA 	1
------------------------------------TGGCCAGGCTGTGAGGGAC 	1
---------------------------------------------TGTGAGGGACGGAGCAGAGTTGG 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCTC 	17
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCT 	6
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	24
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	1919
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	2
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	328
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	1


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Physcomitrella patens GSM313214 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
----------------------GAGCTGTTCAGACTCTGAGAG 	75
----------------------GAGCTGTTCAGACTCTGAGA 	8
-----------------------AGCTGTTCAGACTCTGAGAG 	16
------------------------GCTGTTCAGACTCTGAGAG 	1
----------------------------------------------------------------------------------CGCTCACAGTCTGCACAGCTCT 	1
-----------------------------------------------------------------------------------GCTCACAGTCTGCACAGCTCT 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	24
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	1919
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	3
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	7
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	1
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	328
--------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	1
---------------------------------------------------------------------------------------ACAGTCTGCACAGCTCTCT 	1
----------------------------------------------------------------------------------------CAGTCTGCACAGCTCTCTGT 	1


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Physcomitrella patens GSM313217 CTCACAGTCTGCACAGCTCTC GAGCTGGCCAGGCTGTGAGGG down 2 0


Secondary structure

GCAGTTTTTGCATGATGAGGCTGCGATATGGGGAGCTGGCCAGGCTGTGAGGGACGGAGCAGAGTTGGCTTGTGGCTCCTTGTGGCCCCCTCCAGCAGCTTCCTCCTCACAGTCTGCACAGCTCTCCGTCTCTTGTCCTCTTTTCAGCCACTTTT
--------------------------------GAGCTGGCCAGGCTGTGAG 	1
--------------------------------GAGCTGGCCAGGCTGTGAGGGAC 	3
--------------------------------GAGCTGGCCAGGCTGTGAGG 	3
--------------------------------GAGCTGGCCAGGCTGTGAGGGA 	65
--------------------------------GAGCTGGCCAGGCTGTGAGGG 	42
--------------------------------GAGCTGGCCAGGCTGTGAGGGACG 	2
---------------------------------AGCTGGCCAGGCTGTGAGGGA 	22
---------------------------------AGCTGGCCAGGCTGTGAGGGAC 	2
---------------------------------AGCTGGCCAGGCTGTGAGGG 	10
---------------------------------AGCTGGCCAGGCTGTGAGG 	1
---------------------------------AGCTGGCCAGGCTGTGAGGGACG 	1
----------------------------------GCTGGCCAGGCTGTGAGGGA 	2
----------------------------------GCTGGCCAGGCTGTGAGGGAC 	1
-----------------------------------CTGGCCAGGCTGTGAGGGACG 	1
-----------------------------------------------------------------------------------------------------CCTCCTCACAGTCTGCACAGC 	1
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCTCTC 	3
------------------------------------------------------------------------------------------------------CTCCTCACAGTCTGCACAGCT 	1
--------------------------------------------------------------------------------------------------------CCTCACAGTCTGCACAGCTCT 	1
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCC 	11
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	4
---------------------------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	385
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCC 	2
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	1
----------------------------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	54
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTCC 	1
-----------------------------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	3


Overlaps with: MNEST039510 MNEST051413 MNEST051414
Overlaps with miRBase pre-miRNAs: ppt-MIR533a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Physcomitrella patens GSM313217 CTCACAGTCTGCACAGCTCTC GAGCTGTTCAGACTCTGAGAG down 2 0


Secondary structure

AGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTCTGCACAGCTCTCTGTGTTGCTCCCTCTAATT
--------------AGCATGGAGAGCTGTTCAGAC 	1
---------------GCATGGAGAGCTGTTCAGACT 	1
----------------------GAGCTGTTCAGACTCTGAGA 	22
----------------------GAGCTGTTCAGACTCTGAGAG 	351
----------------------GAGCTGTTCAGACTCTGAGAGA 	11
----------------------GAGCTGTTCAGACTCTGAGAGAGG 	1
-----------------------AGCTGTTCAGACTCTGAGAGA 	5
-----------------------AGCTGTTCAGACTCTGAGAG 	23
-----------------------AGCTGTTCAGACTCTGAGA 	1
------------------------GCTGTTCAGACTCTGAGAG 	1
------------------------GCTGTTCAGACTCTGAGAGA 	1
------------------------GCTGTTCAGACTCTGAGAGAG 	3
----------------------------------------------------------------------------------CGCTCACAGTCTGCACAGCTC 	3
-----------------------------------------------------------------------------------GCTCACAGTCTGCACAGCTCT 	3
-----------------------------------------------------------------------------------GCTCACAGTCTGCACAGCTC 	1
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTC 	2
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTCT 	3
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCT 	4
------------------------------------------------------------------------------------CTCACAGTCTGCACAGCTCTC 	385
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTCT 	4
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCT 	1
-------------------------------------------------------------------------------------TCACAGTCTGCACAGCTCTC 	54
--------------------------------------------------------------------------------------CACAGTCTGCACAGCTCTC 	3
---------------------------------------------------------------------------------------ACAGTCTGCACAGCTCTCTG 	1
---------------------------------------------------------------------------------------ACAGTCTGCACAGCTCTCT 	1


Overlaps with: MNEST039514 MNEST051416
Overlaps with miRBase pre-miRNAs: ppt-MIR533d
HuntMi prediction: true miRNA