miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTCACAGTCTGCATGGCTCTC

selected species: Physcomitrella patens

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	CTCACAGTCTGCATGGCTCTC	GAGCTGGCCAGACTGTGAGGG	down	2	0

Secondary structure

AGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCTCCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTG
--------------------------------GAGCTGGCCAGACTGTGAGGGA 	3
--------------------------------GAGCTGGCCAGACTGTGAGGG 	16
--------------------------------GAGCTGGCCAGACTGTGAGG 	1
---------------------------------AGCTGGCCAGACTGTGAGGGA 	2
---------------------------------AGCTGGCCAGACTGTGAGGG 	1
---------------------------------AGCTGGCCAGACTGTGAGGGAT 	1
----------------------------------GCTGGCCAGACTGTGAGGG 	2
----------------------------------------------------------------------------------------------------CCTCACAGTCTGCATGGCTCTC 	4
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCTC 	62
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTC 	1
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCT 	1
------------------------------------------------------------------------------------------------------TCACAGTCTGCATGGCTCTC 	6

Overlaps with: MNEST039515 MNEST051417
Overlaps with miRBase pre-miRNAs: ppt-MIR533e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM313213	CTCACAGTCTGCATGGCTCTC	GAGCTGGCCAGACTGTGAGGG	down	2	0

Secondary structure

AGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCTCCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTG
----------------------------------------------------------------------------------------------------CCTCACAGTCTGCATGGCTCT 	1
----------------------------------------------------------------------------------------------------CCTCACAGTCTGCATGGCTCTC 	2
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCTC 	6
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCT 	1

Overlaps with: MNEST039515 MNEST051417
Overlaps with miRBase pre-miRNAs: ppt-MIR533e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313214	CTCACAGTCTGCATGGCTCTC	GAGCTGGCCAGACTGTGAGGG	down	2	0

Secondary structure

AGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCTCCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTG
--------------------------------GAGCTGGCCAGACTGTGAGGGA 	1
---------------------------------AGCTGGCCAGACTGTGAGGGAT 	1
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCTC 	10

Overlaps with: MNEST039515 MNEST051417
Overlaps with miRBase pre-miRNAs: ppt-MIR533e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM313217	CTCACAGTCTGCATGGCTCTC	GAGCTGGCCAGACTGTGAGGG	down	2	0

Secondary structure

AGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCTCCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTG
--------------------------------GAGCTGGCCAGACTGTGAGGG 	2
--------------------------------GAGCTGGCCAGACTGTGAGGGA 	3
----------------------------------------------------------------------------------------------------CCTCACAGTCTGCATGGCTCTC 	1
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCT 	1
-----------------------------------------------------------------------------------------------------CTCACAGTCTGCATGGCTCTC 	8
------------------------------------------------------------------------------------------------------TCACAGTCTGCATGGCTCTC 	1

Overlaps with: MNEST039515 MNEST051417
Overlaps with miRBase pre-miRNAs: ppt-MIR533e
HuntMi prediction: true miRNA