miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTCCCTAACGGAGTCAGATTG

selected species: Drosophila melanogaster

11 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
---ACCAGTCCTGGTGGAGCTC 	2
---------------------CAAATTGACTCTAGTAGGGAGT 	1
---------------------CAAATTGACTCTAGTAGGG 	1
----------------------AAATTGACTCTAGTAGGGAGTCC 	1
----------------------AAATTGACTCTAGTAGGGAGTC 	6
----------------------AAATTGACTCTAGTAGGGA 	1
----------------------AAATTGACTCTAGTAGGGAGT 	7
----------------------AAATTGACTCTAGTAGGGAG 	8
-----------------------AATTGACTCTAGTAGGGAGTC 	1
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	66
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	1
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	41
----------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	1
----------------------------------------------------------TCCCTAACGGAGTCAGATTG 	2
----------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	16

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	CTCCCTAACGGAGTCAGATTG	AATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
-AACCAGTCCTGGTGGAGCTC 	1
---------------------AAATTGACTCTAGTAGGGAGTC 	4
---------------------AAATTGACTCTAGTAGGGAGT 	1
---------------------AAATTGACTCTAGTAGGGAG 	1
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	18
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	21
---------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	2

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
--AACCAGTCCTGGTGGAGCTC 	1
---ACCAGTCCTGGTGGAGCTC 	1
--------------------TCAAATTGACTCTAGTAGGGAGT 	1
---------------------CAAATTGACTCTAGTAGGGAG 	4
---------------------CAAATTGACTCTAGTAGGGAGT 	89
---------------------CAAATTGACTCTAGTAGGGA 	1
---------------------CAAATTGACTCTAGTAGGGAGTC 	2
---------------------CAAATTGACTCTAGTAGGG 	1
----------------------AAATTGACTCTAGTAGGGAGTCC 	3
----------------------AAATTGACTCTAGTAGGGAGTC 	539
----------------------AAATTGACTCTAGTAGGGAGT 	230
----------------------AAATTGACTCTAGTAGGGA 	24
----------------------AAATTGACTCTAGTAGGGAG 	278
-----------------------AATTGACTCTAGTAGGGAG 	9
-----------------------AATTGACTCTAGTAGGGAGTC 	16
-----------------------AATTGACTCTAGTAGGGAGT 	6
------------------------ATTGACTCTAGTAGGGAGTCC 	1
------------------------ATTGACTCTAGTAGGGAGT 	1
------------------------ATTGACTCTAGTAGGGAGTC 	2
-------------------------TTGACTCTAGTAGGGAGTC 	1
--------------------------------------------------------ACTCCCTAACGGAGTCAGATTG 	1
--------------------------------------------------------ACTCCCTAACGGAGTCAGATTGA 	4
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	8
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	1937
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	163
---------------------------------------------------------CTCCCTAACGGAGTCAGAT 	2
---------------------------------------------------------CTCCCTAACGGAGTCAGATT 	30
----------------------------------------------------------TCCCTAACGGAGTCAGATTG 	4
----------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	52
----------------------------------------------------------TCCCTAACGGAGTCAGATT 	3
----------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	81
-----------------------------------------------------------CCCTAACGGAGTCAGATTGA 	1
------------------------------------------------------------CCTAACGGAGTCAGATTGAG 	3
------------------------------------------------------------CCTAACGGAGTCAGATTGA 	1

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	CTCCCTAACGGAGTCAGATTG	AATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
--------------------CAAATTGACTCTAGTAGGGAG 	1
--------------------CAAATTGACTCTAGTAGGGAGT 	1
---------------------AAATTGACTCTAGTAGGGAGTC 	2
---------------------AAATTGACTCTAGTAGGGAG 	1
--------------------------------------------------------CTCCCTAACGGAGTCAGATT 	2
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	14
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	17
---------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	2
---------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	1

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
----------------------AAATTGACTCTAGTAGGGAGTC 	8
----------------------AAATTGACTCTAGTAGGGAGT 	2
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	4
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	102
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	14
----------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	5

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360260-14326	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
---------------------CAAATTGACTCTAGTAGGGAGT 	2
----------------------AAATTGACTCTAGTAGGGAGTC 	10
----------------------AAATTGACTCTAGTAGGGAGT 	3
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	3
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	69
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	12
----------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	1
----------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	6

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM322543-14323	CTCCCTAACGGAGTCAGATTG	AATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
-------------------TCAAATTGACTCTAGTAGGGAG 	1
--------------------CAAATTGACTCTAGTAGGGAGT 	23
--------------------CAAATTGACTCTAGTAGGGAGTC 	1
---------------------AAATTGACTCTAGTAGGGAGT 	76
---------------------AAATTGACTCTAGTAGGGAG 	83
---------------------AAATTGACTCTAGTAGGGAGTC 	192
---------------------AAATTGACTCTAGTAGGGA 	13
------------------------TTGACTCTAGTAGGGAGTC 	3
-------------------------------------------------------ACTCCCTAACGGAGTCAGATTG 	9
-------------------------------------------------------ACTCCCTAACGGAGTCAGATTGA 	3
--------------------------------------------------------CTCCCTAACGGAGTCAGATT 	6
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	441
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGAG 	18
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	1371
---------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	31
---------------------------------------------------------TCCCTAACGGAGTCAGATTG 	2
---------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	121

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286604-9792	CTCCCTAACGGAGTCAGATTG	AATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACAC
---------------------AAATTGACTCTAGTAGGGAGT 	3
--------------------------------------------------------CTCCCTAACGGAGTCAGATT 	1
--------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	11
--------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	23
---------------------------------------------------------TCCCTAACGGAGTCAGATTGA 	8
---------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	2

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM385744-16261	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
----------------------AAATTGACTCTAGTAGGGAGTC 	1
----------------------AAATTGACTCTAGTAGGGAGT 	1
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	6
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	3

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM322208-14317	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
----------------------AAATTGACTCTAGTAGGGAGTC 	1
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	9
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	4
----------------------------------------------------------TCCCTAACGGAGTCAGATTG 	1
----------------------------------------------------------TCCCTAACGGAGTCAGATTGAG 	1

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM385748-16264	CTCCCTAACGGAGTCAGATTGA	AAATTGACTCTAGTAGGGAGTC	down	3	0

Secondary structure

GGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACA
--------------------TCAAATTGACTCTAGTAGGGAGT 	1
----------------------AAATTGACTCTAGTAGGGAGTC 	2
----------------------AAATTGACTCTAGTAGGGAGT 	1
-----------------------AATTGACTCTAGTAGGGAGTC 	1
---------------------------------------------------------CTCCCTAACGGAGTCAGATTGA 	11
---------------------------------------------------------CTCCCTAACGGAGTCAGATTG 	5
---------------------------------------------------------CTCCCTAACGGAGTCAGAT 	1

Overlaps with: MNEST036479 MNEST036480
Overlaps with miRBase pre-miRNAs: dme-mir-929
HuntMi prediction: true miRNA